Olga Krebs

About Olga Krebs:

I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project (http://www.sysmo-db.org) I was responsible for metadata design (SEEK), conceptual and logical modelling of experimental data (JERM), now our team continue this work as FAIRDOM project (http://fair-dom.org/).

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adenocarcinoma AHR aryl hydrocarbon receptor anaerobic annotation array ATP biobank Biosamples boolean breast cancer Cancer Cancer metabolism cDNA Cell culture Cell Cycle cell line cervix chemostat clinical studies CLL clone Clostridium Clostridium acetobutylicum community data and model management Data Integration data licencing Data Management data retrieval data sharing dissimantion ENA enzymes Escherichia coli evolution experiment fair data FAIRDOM FBA female flux fluxes Format gel gene expression genome scale genome tiling array Genomics glucose pulse graphs homo sapiens human IL4I1interleukin 4 induced 1T cell ex... Illumina Illumnia immune suppression Immunoassays immunoblot Immunosurveillance investigation ISA isobutanol JERM K12 strain Kinetic modelling Kynurenine labeling Liver magnetic beads Mathematical modeling Matlab medium metabolic network metabolism metabolites Metabolomics microarray microbial strain Microbiology Microfluids model management Modeling Modelling Molecular Dynamics mRNA library NAD pathway dynamics and evolution NAD-dependent signaling and biosynthesis networking neurodegenerative disease nicotinamide N-methyltransferase (NNMT) nicotinamide phosphoribosyltransferas... nucleotide sequence ODE Ontology open access optimisation ORF Pals pathway PC PCR phenotype photosynthesis plant protease inhibitors Proteomics protokol Pseudomonas public reactions RightField RNA RNA isolation RNA-Seq RNAseq Sample SEEK seek tutorial semantics software SOP specimen Standard Operating Procedure standardisation standards steady state stoichiometric equation strain Stressosome sucrose transport Synthetic Biology Systems Biology T cells Template templates tool transcription factor Transcriptomics transformer transport treatment Tryptophan tryptophan metabolism tumor micro-environmentadaptive immunity yeast
Project positions

SysMO DB (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; ICYSB 2015 - International Practical Course in Systems Biology (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; ZucAt (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; SysMO-LAB (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Kinetics on the move - Workshop 2016 (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Example use cases (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM user meeting (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM user meeting (FAIRDOM User meeting) ; ErasysApp Funders (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; EraCoBiotech 2 nd call proposal preparation (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; EraCoBiotech 2 nd call proposal preparation (Norwegian University of Science and Technology) ; Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM & LiSyM & de.NBI Data Structuring Training (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; MESI-STRAT (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; INCOME (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Multiscale modelling of state transitions in the host-microbiome-brain network (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; BESTER (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; TRALAMINOL (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Sustainable co-production (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; INDIE - Biotechnological production of sustainable indole (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Extremophiles metabolsim (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; PoLiMeR - Polymers in the Liver: Metabolism and Regulation (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; GB-XMap: Assessing the risk of gut-brain cross-diseases Investigating the gut-brain-axis (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; NAD COMPARTMENTATION (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; HOTSOLUTE (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Stress granules (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM Community Workers (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik" (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; COVID-19 Disease Map (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; AquaHealth (ERA-BlueBio) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; LiSyM Core Infrastructure and Management (LiSyM-PD) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Early Metabolic Injury (LiSyM-EMI - Pillar I) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Chronic Liver Disease Progression (LiSyM-DP - Pillar II) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; The Hedgehog Signalling Pathway (LiSyM-JGMMS) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM) (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Modelling COVID-19 epidemics (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation (Heidelberg Institute for Theoretical Studies (HITS gGmbH))

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