As an Innovative Training Network (ITN) , our approach to bringing about innovation is via education. The 15 Early Stage Researchers that join our project will gain multidisciplinary and cutting-edge expertise from our hosting institutions and associated partners, which is required to manipulate biological catalysts for meeting tomorrow’s demanding challenges in sustainable production processes.
CC-TOP is focused on exploiting the potential benefits of C-C bond forming enzymes (“carboligases”) in the industrial synthesis of high value chiral compounds. We combine a multidisciplinary range of techniques and training actions to cover everything from enzyme discovery and optimisation to the design of industrial processes that allow using carboligases in real-life applications.
Building complex compounds by connecting carbon-carbon bonds is at the core of industrial organic synthesis. However, current methods often have important drawbacks, such as the use of hazardous substances or the generation of toxic waste. Our innovation is oriented to apply improved carboligases as a complementary, eco-friendly catalyst class, so that they can unleash their potential to yield the same outputs as conventional methods, but in a more efficient, selective and sustainable way.
Programme: EU Projects
SEEK ID: https://fairdomhub.org/projects/250
Funding codes:- This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 956631
Public web page: https://cc-top-itn.eu/
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project start date: 1st Mar 2021
Project end date: 30th Mar 2024
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- People (36)
- Programmes (1)
- Institutions (19)
- Investigations (0+6)
- Studies (1+26)
- Assays (3+44)
- Data files (7+55)
- SOPs (4+11)
- Publications (4)
- Presentations (2+30)
- Events (0+3)
- Documents (7+56)
- Sample types (0+1)
Projects: CC-TOP
Institutions: Université Clermont Auvergne (UCA)
Projects: CC-TOP
Institutions: CSIC Barcelona - Consejo Superior de Investigaciones Científicas
Projects: CC-TOP
Institutions: University of Groningen
Projects: CC-TOP
Institutions: Johnson Matthey
Projects: TRALAMINOL, CC-TOP
Institutions: BASF
Projects: CC-TOP
Institutions: University of Zagreb
Projects: CC-TOP
Institutions: European Research Executive Agency
PO
ESR14
Projects: TRALAMINOL, CC-TOP
Institutions: PROZOMIX
Expertise: Enzyme Discovery, metagenomics, HT-Cloning, Enzyme Production, Assay Development
Tools: In silico Mining
Projects: TRALAMINOL, CC-TOP
Institutions: CSIC Barcelona - Consejo Superior de Investigaciones Científicas
Projects: CC-TOP
Institutions: Technische Universität Darmstadt
Projects: CC-TOP
Institutions: University of Goettingen
Expertise: biocatalysis, catalysis, Organic Synthesis
Projects: CC-TOP
Institutions: University of Goettingen
Projects: TRALAMINOL, CC-TOP
Institutions: Technische Universität Darmstadt
Projects: CC-TOP
Institutions: University of Zagreb
Projects: TRALAMINOL, CC-TOP
Institutions: Université Clermont Auvergne (UCA)
Projects: CC-TOP
Institutions: Autonomous University of Madrid
https://orcid.org/0000-0001-5740-5584Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, EraCoBiotech 2 nd call proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER, TRALAMINOL, Sustainable co-production, INDIE - Biotechnological production of sustainable indole, Extremophiles metabolsim, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation, NAD COMPARTMENTATION, HOTSOLUTE, Stress granules, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, AquaHealth (ERA-BlueBio), LiSyM Core Infrastructure and Management (LiSyM-PD), Early Metabolic Injury (LiSyM-EMI - Pillar I), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, CC-TOP, BioCreative VII, MESI-STRAT Review, SDBV/HITS, MESI-Review 2024
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology, University of Rostock, University of Innsbruck
https://orcid.org/0000-0003-3540-0402Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics, semantics, Curation, Ontology, Data Modelling
Tools: Cell and tissue culture, Databases, Chip-chip, BioMart, Protege, RightField, SEEK
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In **[SySMO-DB ...
In a well with a total volume of 250 µL, the following components are added: 219 µL of 0.1 M TEA buffer, pH 7.5 1 µL of L-LDH (550 U.mL-1) 10 µL of NADH (10 mg.mL-1) 20 µL of the sample to be assayed
The initial absorbance (Ainitial) was measured at 340 nm, followed by the introduction of the Li-HPA sample solution, whether diluted or not. After stabilization, the final absorbance (Afinal) was measured. The concentration of Li-HPA was determined using the equation: ...
Snapshots: No snapshots
Submitter: Andrea Rizzo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: Enzymatic reaction set-up
Data files: Kinetic of DERA-61 towards non-natural substrate, Screening of the activity of DERA-61 in differe..., Time course of the aldol addition of furfural a..., Variation of DERA-61 melting temperature in dif...
Snapshots: No snapshots
Submitter: Andrea Rizzo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: 3D structure of DERA-61, 3D structure of DERA-61, Phylogenetic tree of all the 48 metagenomic DERAs
Snapshots: No snapshots
A stock solution of BSA (Bovine serum Albumine) 1 mg/ml is made and from this solution different aliquots are picked in order to obtain different dilution solution.
- 25 µL from solution + 975 µL water to obtain 25 µg/ml
- 50 µL from solution + 950 µL of water to obtain 50 µg/ml
- 75 µL from solution + 925 µL water to obtain 75 µg/ml
- 100 µL from solution + 900 µL water to obtain 100 µg/ml
- 125 µL from solution + 825 µL water to obtain 125 µg/ml
- 150 µL from solution + 850 µL water to ...
Submitter: Giuseppe Arbia
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
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Time course of the aldol addition of furfural and acetone using DERA-61 in non-optimized conditions
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
3D structure of DERA-61 predicted by alphafold.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
3D structure of DERA-61 predicted by alphafold.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Phylogenetic tree of all the 48 metagenomic DERAs in this work, with data on the expression quality of each, and the activity towards the aldol addition of furfural/benzaldehyde against acetone/butanone/cyclobutanone.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Variation of DERA-61 melting temperature in different conditions of pH, buffer type and concentration of NaCl
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Kinetic of DERA-61 towards the aldol addition of furfural and acetone.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Creator: Diletta Arceri
Submitter: Diletta Arceri
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: Optimization of DERA-61 reaction conditions and 1 hidden item
This guidlines has been developed by Rita Volkers from Wageningen University for IBISBA project, as example to use
Creators: Olga Krebs, Rita Volkers
Submitter: Olga Krebs
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
Abstract (Expand)
Authors: Mehmet Mervan Çakar, Nevena Milčić, Theofania Andreadaki, Simon Charnock, Wolf-Dieter Fessner, Zvjezdana Findrik Blažević
Date Published: 21st Aug 2024
Publication Type: Journal
DOI: 10.1007/s00253-024-13277-1
Citation: Çakar, M.M., Milčić, N., Andreadaki, T., Charnock, S., Fessner, W.-D., Findrik Blažević, Z., Kinetic characterization of two neuraminic acid synthases and evaluation of their application potential. Appl Microbiol Biotechnol 108, 446 (2024). https://doi.org/10.1007/s00253-024-13277-1
Abstract (Expand)
Authors: Andrea Rizzo, Maria Carmen Aranda, James Galman, Annette Alcasabas, Akash Pandya, Amin Bornadel, Bruna Costa, Helen C Hailes, John M Ward, Jack W.E. Jeffries, Beatriz Dominguez
Date Published: 2nd Jul 2024
Publication Type: Journal
Citation: ChemBioChem,e202400278
Abstract (Expand)
Editor:
Date Published: 30th May 2024
Publication Type: Journal
DOI: 10.1039/D4GC01373E
Citation:
Abstract
Date Published: 14th Dec 2022
Publication Type: Journal
Citation:
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster made for NextGenBiocat conference in Heraklion (Greece)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster made for NextGenBiocat conference in Heraklion (Greece)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster realized for BIOTRANS 2023 in La Rochelle (France)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster for the CC-TOP organized workshop at UAM
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays