Assays

If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hibberd Victoria

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Plate1118 #1-CCR2 for BioDare.xlsx, Readme.md, Sample_list.csv, Statistics 7213.csv, Statistics 7215.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:47, Last updated: 9th Sep 2026 at 08:27

cca1 lhy Long #1 CAB2 marker

BioDare1

cca1 lhy Long #1 CAB2 marker

Property	Value
BioDare ID	3647
Author	Victoria Hibberd
Institution	University of Warwick University of Edinburgh
License	CC_BY

Description

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hibberd Victoria

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Plate1117 #1-CAB2 for BioDare.xlsx, Readme.md, Sample_list.csv, Statistics 7214.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:46, Last updated: 9th Sep 2026 at 08:26

cca1 lhy Long #1 CCA1 marker

BioDare1

cca1 lhy Long #1 CCA1 marker

Property	Value
BioDare ID	3638
Author	Victoria Hibberd
Institution	University of Edinburgh
License	CC_BY

Description

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hibberd Victoria

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Plate1116 #1-CCA1 for BioDare.1.xlsx, Readme.md, Sample_list.csv, Statistics 7197.csv, Statistics 7198.csv, Statistics 7199.csv, Statistics 7200.csv, Statistics 7201.csv, Statistics 7202.csv, Statistics 7203.csv, Statistics 7204.csv, Statistics 7216.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:44, Last updated: 9th Sep 2026 at 08:26

AT0049

BioDare1

AT0049

Property	Value
BioDare ID	13558463723152
Author	Sarah Hodge
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging10:10 blue+red into constant light

Purpose

testing acute light responses at dawn and dusk

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hodge Sarah

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0049.2.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, Statistics 3058.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:05, Last updated: 9th Sep 2026 at 08:22

27C BL-cryptochrome paper-rep3

BioDare1

27C BL-cryptochrome paper-rep3

Property	Value
BioDare ID	13390776176796
Author	Peter Gould
Institution	University of Liverpool
License	CC_BY

Description

27C, BL, on sucrose

Purpose

Temperature-comp-photoreceptor mutants

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Gould Peter

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, Statistics 3579.csv, Statistics 3580.csv, test-27BL-rep3.2.xlsx

Snapshots: No snapshots

Created: 19th Jun 2026 at 13:29, Last updated: 9th Sep 2026 at 08:22

27C BL-cryptochrome paper-rep2

BioDare1

27C BL-cryptochrome paper-rep2

Property	Value
BioDare ID	13390726557783
Author	Peter Gould
Institution	University of Liverpool
License	CC_BY

Description

27C, BL, on sucrose

Purpose

Temperature-comp-photoreceptor mutants

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Gould Peter

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 1958.csv, Statistics 1959.csv, test-27BL-rep2.1.xlsx

Snapshots: No snapshots

Created: 19th Jun 2026 at 13:23, Last updated: 9th Sep 2026 at 08:21

27C BL-cryptochrome paper-rep1

BioDare1

27C BL-cryptochrome paper-rep1

Property	Value
BioDare ID	13390707022980
Author	Peter Gould
Institution	University of Liverpool
License	CC_BY

Description

27C, BL, on sucrose

Purpose

Temperature-comp-photoreceptor mutants

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Gould Peter

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 1674.csv, Statistics 1675.csv, Statistics 1676.csv, Statistics 1677.csv, Statistics 1678.csv, Statistics 1679.csv, test-27BL-rep1.1.xlsx

Snapshots: No snapshots

Created: 19th Jun 2026 at 13:17, Last updated: 9th Sep 2026 at 08:20

LUC CAB CCR2 MUT BL30 2LD to 5LL 17C 05/10/11

BioDare1

LUC CAB CCR2 MUT BL30 2LD to 5LL 17C 05/10/11

Property	Value
BioDare ID	13185871416482
Author	Peter Gould
Institution
License	CC_BY

Description

BL 17C 2LD to 5LL

Purpose

To determine the effect of mutants on circadian clock in a temperature specific manner. RoBuST mutant library.

Comments

Part of a set of data from all RoBuST mutants looking at their effects on clock over a range of environmental conditions from RL, BL, RBL ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Gould Peter

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 2136.csv, clock model.2.jpg, metamorph 17.xlsx

Snapshots: No snapshots

Created: 19th Jun 2026 at 13:11, Last updated: 9th Sep 2026 at 08:18

AT0053: 4x3:21-LL

BioDare1

AT0053: 4x3:21-LL

Property	Value
BioDare ID	13790860334747
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging under 3:21 cycles then constant light. Replicate of experiment AT0064; similar to AT0007, AT0028.

Purpose

photoperiod alteration study

Comments

Imaging started 23/01/07. Fungal infection on GI and CCR2 cca1 lhy mutant plate. CAB, GI, CCA1, CCR2 cca1 lhy groups ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0053.rgn, AT0053.xls, AT0053.xls_imported, AT0053brassDerandomized_Results.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 396.csv, Statistics 397.csv, Statistics 397.csv, Statistics 398.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 13:05, Last updated: 9th Sep 2026 at 08:17

AT0011 4x 12:12-LL

BioDare1

AT0011 4x 12:12-LL

Property	Value
BioDare ID	12730738745576
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days of 12hrs light, 12hrs dark into 3 days constant light

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0011.1.xls, AT0011.rgn, AT0011.xls_imported, AT0011_BRASS.xls, AT0011_BRASSDerandomized.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 1784.csv, Statistics 1785.csv, Statistics 1786.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 11:01, Last updated: 8th Sep 2026 at 16:14

AT0057: 4x12:12-LL

BioDare1

AT0057: 4x12:12-LL

Property	Value
BioDare ID	12730731549609
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12:12 LD to LL in RB light

Purpose

testing different photoperiod effect on entrainment and phase on release to LL

Comments

CCR2:LUC in cca1 lhy and in cca1lhygi had white fungal contamination all over plate ELF3:LUC had low germination

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0057.3.xls, AT0057.rgn, AT0057.xls, AT0057.xls_imported, AT0057BRASSDerandomized.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 399.csv, Statistics 401.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:29, Last updated: 8th Sep 2026 at 16:13

AT0091: 4x12:12-LL

BioDare1

AT0091: 4x12:12-LL

Property	Value
BioDare ID	12730563219125
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12L:12D into constant light

Purpose

testing variation of rhythmicity across camera field of view, in single seedlings with CCA1 or TOC1 marker

Comments

Original analysis by John O'Neill; Data curated by Andrew Millar.

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0091.2.xls, AT0091.rgn, AT0091.xls_imported, AT0091BrassDerandomized.xls, AT0091BrassDerandomized_Resultsfft.xls, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv, Statistics 2031.csv, Statistics 226.csv, Statistics 227.csv, Statistics 228.csv, Statistics 8114.csv, Statistics 8115.csv, Statistics 8118.csv, Statistics 8120.csv, WSCCA1LU.cnd, WSCCA1LU.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:22, Last updated: 8th Sep 2026 at 16:12

Analysis of Control Strains Neurospora crassa

BioDare1

Analysis of Control Strains Neurospora crassa

Property	Value
BioDare ID	13945617808900
Author	Felipe Munoz
Institution	Pontificia Universidad Católica de Chile
License	CC_BY

Description

Purpose

Compare different siblings of the parental/control strains in the global screening of transcription factors capable to affect the circadian oscilator

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Munoz Felipe

Study: Unpublished

Organisms: Neurospora crassa

SOPs: No SOPs

Data files: BioDare_metadata.json, Controls.3.xlsx, Individual results.csv, Readme.md, STANDARD_DATAFILE.3.txt, STANDARD_RAWDATAFILE.3.txt, Sample_list.csv, Statistics 2116.csv, Statistics 2117.csv, Statistics 2118.csv, Statistics 2119.csv, Statistics 2120.csv, Statistics 2121.csv, Statistics 2122.csv, Statistics 2123.csv, Statistics 2124.csv, Statistics 2125.csv, Statistics 2126.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:47, Last updated: 8th Sep 2026 at 16:09

Carbon Source

BioDare1

Carbon Source

Property	Value
BioDare ID	1181
Author	Felipe Munoz
Institution	Pontificia Universidad Católica de Chile
License	CC_BY

Description

Purpose

Compare Control Strains in different Carbon Sources

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Munoz Felipe

Study: Unpublished

Created: 19th Jun 2026 at 09:45, Last updated: 8th Sep 2026 at 16:05

Entrainment Control Analysis

BioDare1

Entrainment Control Analysis

Property	Value
BioDare ID	1178
Author	Felipe Munoz
Institution	Pontificia Universidad Católica de Chile
License	CC_BY

Description

Purpose

Compare Period Calculations using entrainment and non entrainment strains for 72 hours

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Munoz Felipe

Study: Unpublished

Organisms: Neurospora crassa

SOPs: No SOPs

Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 334.csv, Statistics 335.csv, Statistics 336.csv, Statistics 337.csv, Statistics 338.csv, Statistics 339.csv, Statistics 426.csv, Statistics 427.csv, Statistics 429.csv, Statistics 430.csv, Statistics 431.csv, entrenamiento o no.xlsx

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:43, Last updated: 8th Sep 2026 at 15:57

Controls

BioDare1

Controls

Property	Value
BioDare ID	1153
Author	Felipe Munoz
Institution	Pontificia Universidad Católica de Chile
License	CC_BY

Description

Purpose

Global Search

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Munoz Felipe

Study: Unpublished

Organisms: Neurospora crassa

SOPs: No SOPs

Data files: BioDare_metadata.json, Controles.xlsx, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 276.csv, Statistics 277.csv, Statistics 278.csv, Statistics 279.csv, Statistics 280.csv, Statistics 281.csv, Statistics 282.csv, Statistics 283.csv, Statistics 284.csv, Statistics 285.csv, Statistics 286.csv, Statistics 287.csv, Statistics 288.csv, Statistics 289.csv, Statistics 290.csv, Statistics 291.csv, Statistics 292.csv, Statistics 293.csv, Statistics 294.csv, Statistics 295.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:41, Last updated: 8th Sep 2026 at 15:53

010514H1

BioDare1

010514H1

Property	Value
BioDare ID	1244
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 010514H1_log.xlsx, 010514H1_metamorph.xlsx, BioDare_metadata.json, Individual results.csv, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 4632.csv, Statistics 4633.csv, Statistics 4642.csv, Statistics 4643.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:00, Last updated: 8th Sep 2026 at 15:47

010514H2

BioDare1

010514H2

Property	Value
BioDare ID	1245
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 010514H2_log.xlsx, 010514H2_metamorph.xlsx, BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 4644.csv, Statistics 4645.csv, Statistics 4646.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:57, Last updated: 8th Sep 2026 at 15:46

Assays

Filters ×

cca1 lhy Long #1 CCR2 marker

Description

cca1 lhy Long #1 CAB2 marker

Description

cca1 lhy Long #1 CCA1 marker

Description

AT0049

Description

Purpose

Comments

27C BL-cryptochrome paper-rep3

Description

Purpose

Comments

27C BL-cryptochrome paper-rep2

Description

Purpose

Comments

27C BL-cryptochrome paper-rep1

Description

Purpose

Comments

LUC CAB CCR2 MUT BL30 2LD to 5LL 17C 05/10/11

Description

Purpose

Comments

AT0053: 4x3:21-LL

Description

Purpose

Comments

AT0011 4x 12:12-LL

Description

Purpose

Comments

AT0057: 4x12:12-LL

Description

Purpose

Comments

AT0091: 4x12:12-LL

Description

Purpose

Comments

Analysis of Control Strains Neurospora crassa

Description

Purpose

Comments

Carbon Source

Description

Purpose

Comments

Entrainment Control Analysis

Description

Purpose

Comments

Controls

Description

Purpose

Comments

010514H1

Description

Purpose

010514H2

Description

Purpose

Comments

Filters