Assays

1427 Assays visible to you, out of a total of 2444

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

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Minireviews about each enzyme in the mitochindrial beta-oxidation model on which the final parameter choices (fixed-parameter model) and parameter sampling distributions (ensemble) were based.

Submitter: Christoff Odendaal

Biological problem addressed: Model Analysis Type

Investigation: Mitochondrial fatty acid oxidation in human liver

Study: Model construction

Organisms: No organisms

Models: No Models

SOPs: Parameter Search SOP

Data files: No Data files

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.2137.2

Created: 7th Jul 2023 at 10:41, Last updated: 2nd May 2026 at 07:23

Models

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

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No description specified

Submitter: Christoff Odendaal

Biological problem addressed: Model Analysis Type

Investigation: Mitochondrial fatty acid oxidation in human liver

Study: Model construction

Organisms: No organisms

Models: Model notebooks, odendaal1, odendaal2, odendaal3

SOPs: Parameter Search SOP

Data files: No Data files

Snapshots: No snapshots

Created: 12th Dec 2022 at 12:54, Last updated: 2nd May 2026 at 07:22

Ensemble kinetic model

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

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Explicit consideration of kinetic paramater uncertainty as obtained from literature.

Submitter: Christoff Odendaal

Biological problem addressed: Model Analysis Type

Investigation: Mitochondrial fatty acid oxidation in human liver

Study: Ensemble modelling of human mitochondrial fatty...

Organisms: No organisms

Models: No Models

SOPs: Parameter Search SOP

Data files: No Data files

Snapshots: No snapshots

Created: 1st May 2026 at 14:59, Last updated: 1st May 2026 at 15:02

Non-volatile metabolites

Phage infection in Nitrosomonas europaea

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No description specified

Submitter: Meina Neumann-Schaal

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Metabolite profiles after phage infection

Study: Metabolite profiling

Organisms: No organisms

SOPs: Sample handling and measurement

Data files: Mass spec data

Snapshots: Non-volatile metabolites

DOI: 10.15490/fairdomhub.1.assay.2765.1

Created: 9th Dec 2025 at 13:12, Last updated: 17th Apr 2026 at 10:48

Mutational Spectral Analysis - Data Linked

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: P.BMC-260326-V1_iconPCR-analysis.docx

Data files: No Data files

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:20, Last updated: 15th Apr 2026 at 19:34

Short Read Sequencing - Data Linked

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: P.BMC-260326-V1_iconPCR-sequencing.docx

Data files: No Data files

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:19, Last updated: 15th Apr 2026 at 19:34

Genome Alignment - Data Linked

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: P.BMC-260326-V1_iconPCR-sequencing.docx

Data files: No Data files

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:19, Last updated: 15th Apr 2026 at 19:34

Variant Calling - Data Linked

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: P.BMC-260326-V1_iconPCR-analysis.docx

Data files: No Data files

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:19, Last updated: 15th Apr 2026 at 19:34

Library Prep - Metadata

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: P.BMC-260326-V1_iconPCR-libraryPrep.docx

Data files: No Data files

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:19, Last updated: 15th Apr 2026 at 19:34

All Metadata

NExtSEEK Independent Projects

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: BioMicro Center

Study: IMPACT OF FLUORESCENT DYES ON MUTATIONS IN NEXT...

Organisms: No organisms

SOPs: No SOPs

Data files: ICONPCR ALL Metadata.xlsx

Snapshots: No snapshots

Created: 15th Apr 2026 at 19:32, Last updated: 15th Apr 2026 at 19:33

All Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: No SOPs

Data files: LinVo All Metadata.xlsx

Snapshots: No snapshots

Created: 6th Apr 2026 at 22:02, Last updated: 8th Apr 2026 at 11:25

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: mouse_protocol_LiVo-Dec2025.pdf, necropsy_histopathology_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:37, Last updated: 8th Apr 2026 at 03:28

Protein Extraction - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: western_blot_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:40, Last updated: 7th Apr 2026 at 22:53

Western Blot Analysis - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:41, Last updated: 7th Apr 2026 at 22:47

Mutational Spectra Analysis - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: statistics.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:39, Last updated: 7th Apr 2026 at 22:46

Imaging Analysis - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: statistics.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:40, Last updated: 7th Apr 2026 at 22:46

Genome Alignment - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: statistics.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:39, Last updated: 7th Apr 2026 at 22:44

Tissue Sectioning - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: necropsy_histopathology_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:40, Last updated: 7th Apr 2026 at 00:32

DNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: Adduct Analyses Methods - LINDSAY_MS.docx, Materials_and_methods_v4.docx, gpt_delta_assay_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:38, Last updated: 6th Apr 2026 at 23:19

Library Prep - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: Adduct Analyses Methods - LINDSAY_MS.docx, Materials_and_methods_v4.docx, gpt_delta_assay_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:39, Last updated: 6th Apr 2026 at 23:19

Short Read Sequencing - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: Materials_and_methods_v4.docx, RNA Extraction Protocol.docx

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:38, Last updated: 6th Apr 2026 at 23:18

Tissue Imaging - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: histology_immunofluorescence.pdf, necropsy_histopathology_LinVo-Dec2025.pdf, radr.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:38, Last updated: 6th Apr 2026 at 23:17

Western Blot - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: western_blot_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:40, Last updated: 6th Apr 2026 at 22:06

GPT Assay - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: gpt_delta_assay_LinVo-Dec2025.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:38, Last updated: 6th Apr 2026 at 22:04

RNA Isolation - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: RNA Extraction Protocol.docx

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:38, Last updated: 6th Apr 2026 at 22:04

Mass Spectrometry - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Early life exposure to N-nitrosamine drives gen...

Organisms: No organisms

SOPs: Adduct Analyses Methods - LINDSAY_MS.docx

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Apr 2026 at 01:39, Last updated: 6th Apr 2026 at 22:03

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Partitioning parameters of N-nitrosamines: An i...

Organisms: No organisms

SOPs: No SOPs

Data files: NB All Metadata.xlsx

Snapshots: No snapshots

Created: 23rd Mar 2026 at 16:37, Last updated: 23rd Mar 2026 at 16:47

Chemical Simulations - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Partitioning parameters of N-nitrosamines: An i...

Organisms: No organisms

SOPs: P.PLA-260213-V1_NB-Materials.docx, P.PLA-260213-V1_NB-Simulation.docx

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Mar 2026 at 16:28, Last updated: 23rd Mar 2026 at 16:47

Experimental Physiochemical Measurement Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Partitioning parameters of N-nitrosamines: An i...

Organisms: No organisms

SOPs: P.PLA-260213-V1_NB-ShakeFlask.docx

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Mar 2026 at 16:27, Last updated: 23rd Mar 2026 at 16:46

Experimental Physiochemical Measurement - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Partitioning parameters of N-nitrosamines: An i...

Organisms: No organisms

SOPs: P.PLA-260213-V1_NB-Materials.docx, P.PLA-260213-V1_NB-ShakeFlask.docx

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Mar 2026 at 16:27, Last updated: 23rd Mar 2026 at 16:46