Assays

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563 Assays visible to you, out of a total of 1061

Results from lipidomics analyses performed in cod liver microsomes of cod exposed to PAH and PFAS mixtures.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Some results from proteomics analyses of cod liver exposed to PAH and PFAS

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Concentration of the egg yolk precursor protein vitellogenin in cod plasma

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Gene expression of cyp1a and acox1 measured by qPCR in liver of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Semi-quantitative determination of Cyp1a protein amount in cod liver, using the ELISA method.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Measurement of DNA fragmentation using the Comet Assay, in white blood cells of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Measurements of PAH metabolites in bile (1-OH-napthalene, 2-OH-naphthalene, 1-OH-phenanthrene, 1-OH-pyrene) and PFAS compounds in liver (PFOS, PFOA, PFNA, PFTrDa)
in Atlantic cod exposed to mixtures of PAHs and PFASs.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Includes physiological informations regarding the fish samples: Weight, length, gender, date sampled, comments regarding physical apperance, in addition to calculations of condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI).

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Enzyme activity of the oxidative stress enzymes glutathione S-transferase (Gst) and catalase (Cat) measured in cod liver

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Assay: _A_02.4_STAR
Short Name: 02.4_STAR
Assay Class: DRY
Assay Type: STAR
Title: mapping reads back to evigene .tr output
Description: mapping reads back to evigene .tr output using STAR to check the percentage of reads that map
pISA Assay creation date: 2019-10-22
pISA Assay creator: Marko Petek
Phenodata: None
Featuredata: None
Data: see ./input/path_to_files.txt

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

please add your model here - associated to this assay

Data for global pH monitoring for precipitation experiments included in the publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution
Included data: Calibration data and pH time evolution

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Matthias Löbe

Assay type: Experimental Assay Type

Technology type: Clinical Document

Snapshots: No snapshots

Optical microscopy experiments for precipitation process.
Images name have the format capture-yearmonthdayhourminutesecond

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for Raman spectroscopy shown in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.

Included are the Raman data for precipitation after 1 minute recton time, 3 minutes reaction time and 15 minutes reaction time.

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for local pH monitoring precipitation experiments in publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.
Included are the calibration data, the signal from Channel 1 (representing signal from dye SR101) and Channel 3 (representing signal from pH dye R6G-EDA) and Channel 5 (brightfield images).
Resolution is 512x512 pixel, images are recorded every 15 seconds. Data collection startet
...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for local pH monitoring expreiments for the dissolution part in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.
Included is data for the calibration, and from the dissolution experiment (Channel 1 data (signal from dye SR101) Channel 3 data (sigenl from dye R6G-EDA, and Channel 5 data (brightfield data)). Resolution is 512x512 pixel, images are recorded every 10sec. Data collection
...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Short Name: 07_Desiree-mapping
Assay Class: DRY
Assay Type: mapping
Title: Desiree mapping
Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Short Name: 05_MSA_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: MSA 3cv and GFF-merged
Description: Multiple sequence alignment of Desiree, PW363, Rywal and ITAG/PGSC
pISA Assay creation date: 2020-03-10
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Short Name: cdhit_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC
Description: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC
pISA Assay creation date: 2020-03-09
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.1263.2

Short Name: 09_annotation-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: Pan-transcriptome fasta files annotation
Description: Annotation of pan-transcriptome and re-annotation of cultivar-specific transcriptomes
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Short Name: 08_centrifuge_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: Centrigufe pan-transcriptome sequence classification
Description: Classify cv rep transcripts and pan-transcriptome singletons based on taxonomy
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Short Name: 06_tr_rep-transrate
Assay Class: DRY
Assay Type: transrate
Title: Cultivar representative transcriptome transrate
Description: Transrate on cultivar specific representatives, GFF merged as a reference for CRRB
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Short Name: 03_components_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: components
Description: representative and alternative pan-transcriptome CDS and polypeptide fasta files
pISA Assay creation date: 2020-03-10
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Short Name: 04_BUSCO_3cvs-GFFmerged
Assay Class: DRY
Assay Type: GFFmerged
Title: BUSCOs
Description: BUSCO on ITAG, PGSC, ITAG/PGSC merged, pan-transcriptome representatives, pan-transcriptome alternatives, and pan-transcriptome
pISA Assay creation date: 2020-03-10
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

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