Assays

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570 Assays visible to you, out of a total of 1089

Model files for FMv1.5. The model is based on FMv1 of Chew et al. PNAS 2014, which is also in FAIRDOMHub and linked to the Model record as an 'Attribution'. FMv1 was extended in this work by Hannah Kinmonth-Schultz and Daniel Seaton, in Matlab.

Submitter: Andrew Millar

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

No description specified

Submitter: Gudrun Gygli

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

To obtain each of the figure 4A - 4D please download "Main Figure 4 Copasi" and open the sub-directory with the name of the sub-figure, run the Copasi files and the time dependence simulation. This will reproduce the figure in this paper.

Submitter: Alexey Kolodkin

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

To obtain each of the figure 2A - 2E please download "Main Figure Copasi" and open the sub-directory with the name of the sub-figure, run the Copasi files and the time dependence simulation. This will reproduce the figure in this paper.

Submitter: Alexey Kolodkin

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

No description specified

Submitter: Alexey Kolodkin

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

No description specified

Submitter: Alexey Kolodkin

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Results from lipidomics analyses performed in cod liver microsomes of cod exposed to PAH and PFAS mixtures.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Some results from proteomics analyses of cod liver exposed to PAH and PFAS

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Concentration of the egg yolk precursor protein vitellogenin in cod plasma

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Gene expression of cyp1a and acox1 measured by qPCR in liver of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Semi-quantitative determination of Cyp1a protein amount in cod liver, using the ELISA method.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Measurement of DNA fragmentation using the Comet Assay, in white blood cells of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Measurements of PAH metabolites in bile (1-OH-napthalene, 2-OH-naphthalene, 1-OH-phenanthrene, 1-OH-pyrene) and PFAS compounds in liver (PFOS, PFOA, PFNA, PFTrDa)
in Atlantic cod exposed to mixtures of PAHs and PFASs.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Includes physiological informations regarding the fish samples: Weight, length, gender, date sampled, comments regarding physical apperance, in addition to calculations of condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI).

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Enzyme activity of the oxidative stress enzymes glutathione S-transferase (Gst) and catalase (Cat) measured in cod liver

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Assay: _A_02.4_STAR
Short Name: 02.4_STAR
Assay Class: DRY
Assay Type: STAR
Title: mapping reads back to evigene .tr output
Description: mapping reads back to evigene .tr output using STAR to check the percentage of reads that map
pISA Assay creation date: 2019-10-22
pISA Assay creator: Marko Petek
Phenodata: None
Featuredata: None
Data: see ./input/path_to_files.txt

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Theresa Bender

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

please add your model here - associated to this assay

Data for global pH monitoring for precipitation experiments included in the publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution
Included data: Calibration data and pH time evolution

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

No description specified

Submitter: Matthias Löbe

Assay type: Experimental Assay Type

Technology type: Clinical Document

Snapshots: No snapshots

Optical microscopy experiments for precipitation process.
Images name have the format capture-yearmonthdayhourminutesecond

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for Raman spectroscopy shown in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.

Included are the Raman data for precipitation after 1 minute recton time, 3 minutes reaction time and 15 minutes reaction time.

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for local pH monitoring precipitation experiments in publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.
Included are the calibration data, the signal from Channel 1 (representing signal from dye SR101) and Channel 3 (representing signal from pH dye R6G-EDA) and Channel 5 (brightfield images).
Resolution is 512x512 pixel, images are recorded every 15 seconds. Data collection startet
...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Data for local pH monitoring expreiments for the dissolution part in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.
Included is data for the calibration, and from the dissolution experiment (Channel 1 data (signal from dye SR101) Channel 3 data (sigenl from dye R6G-EDA, and Channel 5 data (brightfield data)). Resolution is 512x512 pixel, images are recorded every 10sec. Data collection
...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

Short Name: 07_Desiree-mapping
Assay Class: DRY
Assay Type: mapping
Title: Desiree mapping
Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes
pISA Assay creation date: 2020-03-11
pISA Assay creator: Maja Zagorscak
Phenodata: None
Featuredata:
Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

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