Assays

Peaklist files (.mgf) and mascot search files are provided per analysis. Each sample replicate was separated by gel electrophoresis and subdivided into 8 gel-slices. These were subjected to in-gel digest and LC ESI-iontrap MS/MS analyses.

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, toluene, Soluble protein fraction, toleune

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:43, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:38, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, toluene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:39, Last updated: 13th Jul 2026 at 08:18

Soluble protein fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, benzense, Soluble protein fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:42, Last updated: 13th Jul 2026 at 08:18

Mass Spectrometry Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2026 at 14:08, Last updated: 6th Jul 2026 at 15:35

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: All_Metadata - NG Drinking Water.xlsx

Snapshots: No snapshots

Created: 9th Dec 2025 at 17:08, Last updated: 6th Jul 2026 at 15:23

RNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

PCR - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

DNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Library Prep - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Short Read Sequencing - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Mutational Spectra Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx, P.ESS-251028-V1_NG_7-NGS_Analysis

Data files: Musp_matrix-NG-drinkingwater.csv

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_1-Animals.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:57, Last updated: 6th Jul 2026 at 15:23

Mass Spectrometry - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_3-DNA_Adducts.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

GPT Assay - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_4-GPT.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

ELISA - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_9-ELISA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

RaDR - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_5-RADR.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_2-NDMA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:57, Last updated: 6th Jul 2026 at 15:23

cca1 lhy Long #1 CCR2 marker

BioDare1

cca1 lhy Long #1 CCR2 marker

Property	Value
BioDare ID	3648
Author	Victoria Hibberd
Institution	University of Edinburgh
License	CC_BY

Description

If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hibberd Victoria

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Plate1118 #1-CCR2 for BioDare, Readme, Sample_list

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:47, Last updated: 19th Jun 2026 at 15:48

cca1 lhy Long #1 CAB2 marker

BioDare1