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773 Assays visible to you, out of a total of 1582

Single Cell Sequencing – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 20th May 2022 at 19:47

DNA Extraction – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 20th May 2022 at 19:44

NHP Tissue Collection – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 20th May 2022 at 19:43

_A_Work-R

pISA-tree

Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test 2022-05-08 23:13:06

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: UploadSigma.txt, _Assay_METADATA.TXT, input/filename with blanks.txt, input/some-data.txt

Snapshots: No snapshots

Created: 8th May 2022 at 23:13, Last updated: 8th May 2022 at 23:14

_S_Show-files

pISA-tree

Files connected to study: _S_Show

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test 2022-05-08 23:13:06

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: _STUDY_METADATA.TXT

Snapshots: No snapshots

Created: 8th May 2022 at 23:13, Last updated: 8th May 2022 at 23:13

_I_Test-files

pISA-tree

Files connected to investigation: _I_Test

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test 2022-05-08 23:13:06

Study: Investigation files

Organisms: No organisms

SOPs: No SOPs

Data files: _INVESTIGATION_METADATA.TXT, phenodata_20191015.txt, seekignore.txt

Snapshots: No snapshots

Created: 8th May 2022 at 23:13, Last updated: 8th May 2022 at 23:13

_A_Work-R

pISA-tree

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: UploadSigma.txt, _Assay_METADATA.TXT, input/filename with blanks.txt, input/some-data.txt

Snapshots: No snapshots

Created: 8th May 2022 at 22:44, Last updated: 8th May 2022 at 22:45

_S_Show-files

pISA-tree

Files connected to study: _S_Show

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: _STUDY_METADATA.TXT

Snapshots: No snapshots

Created: 8th May 2022 at 22:44, Last updated: 8th May 2022 at 22:44

_I_Test-files

pISA-tree

Files connected to investigation: _I_Test

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Test

Study: Investigation files

Organisms: No organisms

SOPs: No SOPs

Data files: _INVESTIGATION_METADATA.TXT, _INVESTIGATION_METADATA.TXT, phenodata_20191015.txt, seekignore.txt

Snapshots: No snapshots

Created: 8th May 2022 at 22:43, Last updated: 8th May 2022 at 22:44

_A_06_tr_rep-transrate

_p_stRT

Short Name: 06_tr_rep-transrate Assay Class: DRY Assay Type: transrate Title: Cultivar representative transcriptome transrate Description: Transrate on cultivar specific representatives, GFF merged as a reference for CRRB pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Snapshots: No snapshots

Created: 19th Mar 2020 at 12:00, Last updated: 5th May 2022 at 01:38

_A_02_cdhit_3cvs-GFFmerged

_p_stRT

Short Name: cdhit_3cvs-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC Description: cdhit-est and cdhit-2d on 3cv and ITAG/PGSC pISA Assay creation date: 2020-03-09 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.1263.2

Created: 18th Mar 2020 at 21:44, Last updated: 5th May 2022 at 01:36

_A_01_GC_content-count

_p_stRT

Short Name: 01_GC_content-count Assay Class: DRY Assay Type: count Title: GC content and sequence length Description: A, C, T, G content and sequence length pISA Assay creation date: 2020-03-09 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data: ../input/path_to_files.txt

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/Solanum_tuberosum-ITAG_DM_v1_cds.fasta, /input/Solanum_tuberosum_PGSC_merged.fasta, /input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gf..., /output/Solanum_tuberosum-ITAG_DM_v1_cds_GC.txt, /output/Solanum_tuberosum_PGSC_merged.CDS_GC.txt, /output/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_g..., /scripts/GC_content.py, /scripts/tab_to_fasta.py and 12 hidden items

Snapshots: No snapshots

Created: 19th Mar 2020 at 11:02, Last updated: 5th May 2022 at 01:34

In vivo II - GW and WY Biometric data

Systems toxicology of Atlantic cod

No description specified

Submitter: Marta Eide

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: In vivo II - GW and WY: Effects on cod lipid me...

Organisms: No organisms

SOPs: No SOPs

Data files: In vivo II -WY and GW biometrics and 5 hidden items

Snapshots: No snapshots

Created: 25th Nov 2020 at 10:17, Last updated: 29th Apr 2022 at 12:03

Functional Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 22:07, Last updated: 21st Apr 2022 at 20:18

Anti-Microbial Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 21:59, Last updated: 21st Apr 2022 at 20:18

Luminex Data Processing – Data Attached

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx

Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:17

Luminex Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:16

NHP Tissue Collection – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: No SOPs

Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:52, Last updated: 21st Apr 2022 at 20:16

Flow Cytometry Processing – Data Attached

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-samples-publish2021-10-22_00-50.xlsx, D.FILE-211016BOO-1_flowcytometry_10.1371.journa..., D.FILE-samples-publish2021-10-19_03-47.xlsx, D.FLOW-samples-publish2021-10-19_02-49.xlsx

Snapshots: No snapshots

Created: 18th Oct 2021 at 20:47, Last updated: 21st Apr 2022 at 20:15

Flow Cytometry – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-210820-V1_Surface-staining-of-BAL-and-PBM..., P.BOO-210910-V1_Broncoscopy-Laboratory-Protoco_..., P.BOO-211014-V1_User-Manual_231944_smxx.pdf

Data files: D.FLOW-samples-publish2021-10-19_02-49.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx

Snapshots: No snapshots

Created: 18th Oct 2021 at 20:40, Last updated: 21st Apr 2022 at 20:14

Patient Visit – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-200728-V1_2019_April_Bronchoscopy_Protoco..., P.BOO-200728-V1_BAL-SOP-Ver-3.0-DATED-05-Nov-20...

Data files: PAT-samples-publish2021-10-18_22-26.xlsx, PAV-samples-publish2021-10-18_22-32.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx

Snapshots: Snapshot 1

Created: 18th Oct 2021 at 16:23, Last updated: 21st Apr 2022 at 20:14

Single Cell Sequencing – Data Linked

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Antibody-Fc shifts alveolar macrophage metaboli...

Organisms: No organisms

SOPs: No SOPs

Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx

Snapshots: No snapshots

Created: 24th Mar 2022 at 20:56, Last updated: 21st Apr 2022 at 19:50

Single Cell Sequencing Analysis – Data Linked

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Antibody-Fc shifts alveolar macrophage metaboli...

Organisms: No organisms

SOPs: No SOPs

Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx

Snapshots: No snapshots

Created: 7th Apr 2022 at 23:03, Last updated: 21st Apr 2022 at 19:48

Tissue Extraction – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Antibody-Fc shifts alveolar macrophage metaboli...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 18:10, Last updated: 21st Apr 2022 at 19:47

_A_Work-R

pISA-tree

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:43:59

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:44, Last updated: 16th Apr 2022 at 01:44

_A_Work-R

pISA-tree

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:36:26

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:36, Last updated: 16th Apr 2022 at 01:36

_A_Work-R

pISA-tree

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:24:09

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:24, Last updated: 16th Apr 2022 at 01:24

_A_Work-R

pISA-tree

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:20:06

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:20, Last updated: 16th Apr 2022 at 01:20

_S_Show-files

pISA-tree

Files connected to study: _S_Show

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:13:51

Study: _S_Show

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:14

_I_Test-files

pISA-tree

Files connected to investigation: _I_Test

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_Sigma 2022-04-17 01:13:51

Study: Investigation files

Organisms: No organisms

SOPs: No SOPs

Data files: _INVESTIGATION_METADATA.TXT, phenodata_20191015.txt, seekignore.txt

Snapshots: No snapshots

Created: 16th Apr 2022 at 01:13, Last updated: 16th Apr 2022 at 01:14