Assays

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773 Assays visible to you, out of a total of 1590

Compound data, library construction schemes and preparation routine for small drug-like molecules as ligands in docking and for further analysis.

No description specified

To obtain each of the figure 4A - 4D please download "Main Figure 4 Copasi" and open the sub-directory with the name of the sub-figure, run the Copasi files and the time dependence simulation. This will reproduce the figure in this paper.

To obtain each of the figure 2A - 2E please download "Main Figure Copasi" and open the sub-directory with the name of the sub-figure, run the Copasi files and the time dependence simulation. This will reproduce the figure in this paper.

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Results from lipidomics analyses performed in cod liver microsomes of cod exposed to PAH and PFAS mixtures.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Some results from proteomics analyses of cod liver exposed to PAH and PFAS

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Concentration of the egg yolk precursor protein vitellogenin in cod plasma

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Gene expression of cyp1a and acox1 measured by qPCR in liver of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Semi-quantitative determination of Cyp1a protein amount in cod liver, using the ELISA method.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Measurement of DNA fragmentation using the Comet Assay, in white blood cells of Atlantic cod exposed to PAHs and PFASs

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Measurements of PAH metabolites in bile (1-OH-napthalene, 2-OH-naphthalene, 1-OH-phenanthrene, 1-OH-pyrene) and PFAS compounds in liver (PFOS, PFOA, PFNA, PFTrDa) in Atlantic cod exposed to mixtures of PAHs and PFASs.

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Includes physiological informations regarding the fish samples: Weight, length, gender, date sampled, comments regarding physical apperance, in addition to calculations of condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI).

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Enzyme activity of the oxidative stress enzymes glutathione S-transferase (Gst) and catalase (Cat) measured in cod liver

Submitter: Karina Dale

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: PAH/PFAS mixture toxicity in vivo

Assay: _A_02.4_STAR Short Name: 02.4_STAR Assay Class: DRY Assay Type: STAR Title: mapping reads back to evigene .tr output Description: mapping reads back to evigene .tr output using STAR to check the percentage of reads that map pISA Assay creation date: 2019-10-22 pISA Assay creator: Marko Petek Phenodata: None Featuredata: None Data: see ./input/path_to_files.txt

No description specified
No description specified
No description specified

Data for global pH monitoring for precipitation experiments included in the publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution Included data: Calibration data and pH time evolution

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Microbial-induced calcium carbonate precipitati...

No description specified

Optical microscopy experiments for precipitation process. Images name have the format capture-yearmonthdayhourminutesecond

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Microbial-induced calcium carbonate precipitati...

Data for Raman spectroscopy shown in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution.

Included are the Raman data for precipitation after 1 minute recton time, 3 minutes reaction time and 15 minutes reaction time.

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Microbial-induced calcium carbonate precipitati...

Data for local pH monitoring precipitation experiments in publication: Microbial-induced calcium carbonate precipitation An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution. Included are the calibration data, the signal from Channel 1 (representing signal from dye SR101) and Channel 3 (representing signal from pH dye R6G-EDA) and Channel 5 (brightfield images). Resolution is 512x512 pixel, images are recorded every 15 seconds. Data collection startet ...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Microbial-induced calcium carbonate precipitati...

Data for local pH monitoring expreiments for the dissolution part in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution. Included is data for the calibration, and from the dissolution experiment (Channel 1 data (signal from dye SR101) Channel 3 data (sigenl from dye R6G-EDA, and Channel 5 data (brightfield data)). Resolution is 512x512 pixel, images are recorded every 10sec. Data collection ...

Submitter: Jennifer Zehner

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: Microbial-induced calcium carbonate precipitati...

Short Name: 07_Desiree-mapping Assay Class: DRY Assay Type: mapping Title: Desiree mapping Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

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