Assays

What is an Assay?

1403 Assays visible to you, out of a total of 2417

Cell Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_Bacterial-culture-protocol.docx, P.SAS-241120-V1_Cell-culture-protocol.docx

Data files: samples-publish_KPRF_SAS_BAC.xlsx, samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_MUS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:47

Gene Expression Analysis: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_A.GEX.xlsx, samples-publish_KPRF_D.SEQ.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:29

Short Read Sequencing: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_D.SEQ.xlsx, samples-publish_KPRF_DNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:29, Last updated: 5th Feb 2025 at 19:26

Library Prep: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_DNA.xlsx, samples-publish_KPRF_RNA.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:28, Last updated: 5th Feb 2025 at 19:23

Tissue Collection: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_BAC.xlsx, samples-publish_KPRF_MUS.xlsx, samples-publish_KPRF_PAT.xlsx, samples-publish_KPRF_PAV.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 17:09, Last updated: 5th Feb 2025 at 19:06

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: A.DBMM-ASIVBCG.xlsx, samples-publishAS-BCG_A.DBMM, samples-publishAS-BCG_D.SEQ

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:37, Last updated: 3rd Feb 2025 at 22:38

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Data files: samples-publishAS-BCG_D.SEQ, samples-publishAS-BCG_DNA

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:35, Last updated: 3rd Feb 2025 at 22:36

Library Prep - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Data files: samples-publishAS-BCG_BAC_extracted, samples-publishAS-BCG_DNA

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:23, Last updated: 3rd Feb 2025 at 22:27

Bacterial Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FOR-231011_Bacterial Extraction

Data files: samples-publishAS-BCG_BAC_extracted, samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:22, Last updated: 3rd Feb 2025 at 22:20

PET-CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: samples-publishAS-BCG_D.IMG.xlsx, samples-publishAS-BCG_PAV.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:20, Last updated: 3rd Feb 2025 at 22:14

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-250203-V1_IVBCG-AS-NHP-Protocol.docx

Data files: samples-publishAS-BCG_PAV.xlsx, samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:18, Last updated: 3rd Feb 2025 at 21:55

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publishAS-BCG_TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:38, Last updated: 3rd Feb 2025 at 21:55

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-250203-V1_IVBCG-AS-NHP-Protocol.docx

Data files: samples-publishAS-BCG_AB.xlsx, samples-publishAS-BCG_BAC.xlsx, samples-publishAS-BCG_NHP.xlsx, samples-publishAS-BCG_PAV.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:17, Last updated: 3rd Feb 2025 at 21:24

Microvascular Network Formation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_OOC-MVN_Protocol.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx, samples-publishGFP_OOC.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:31, Last updated: 28th Jan 2025 at 19:30

Microfluidic Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_Extravasation.docx

Data files: samples-publishGFP_D.IMG.xlsx, samples-publishGFP_OOC.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:33, Last updated: 28th Jan 2025 at 19:30

Influence of pH and HRT on xylan fermentation

Cell4Chem

(Show All)

No description specified

Submitter: Juan Iglesias-Riobó

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: Xylan_Batch_1, Xylan_CSTR_1, Xylan_SBR_1, Xylan_SBR_cycles

Snapshots: Snapshot 1

DOI: 10.15490/fairdomhub.1.assay.2157.1

Created: 6th Sep 2023 at 08:35, Last updated: 28th Jan 2025 at 14:29

Histology - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Comparable Non-canonical T cell responses are a...

Organisms: No organisms

SOPs: P.SAS-250124-V1_Histology-Protocol.docx

Data files: samples-publishMP_RSTR-D.IMG.xlsx, samples-publishMP_RSTR-TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 21:13, Last updated: 24th Jan 2025 at 20:55

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: No SOPs

Data files: SH_AllMetadata_v2.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 16:55, Last updated: 15th Jan 2025 at 19:09

Library Prep - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_RNAseq.docx

Data files: samples-publishGFP_DNA.xlsx, samples-publishGFP_RNA.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:38, Last updated: 15th Jan 2025 at 19:09

Short Read Sequencing - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_RNAseq.docx

Data files: samples-publishGFP_D.SEQ.xlsx, samples-publishGFP_DNA.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:39, Last updated: 15th Jan 2025 at 19:09

Real-time RT-PCR - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_rtPCR.docx

Data files: samples-publishGFP_D.PCRxlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:41, Last updated: 15th Jan 2025 at 19:09

Gene Expression Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_RNAseq.docx

Data files: samples-publishGFP_A.GEX.xlsx, samples-publishGFP_D.SEQ.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:41, Last updated: 15th Jan 2025 at 19:09

Fluorescence-Activated Cell Sorting - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_FACS.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_D.FLOW.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:35, Last updated: 15th Jan 2025 at 19:09

Cell Culture Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_Size-and-Proliferation.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx, samples-publishGFP_D.IMG.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:36, Last updated: 15th Jan 2025 at 19:09

Cell Culture Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_Size-and-Proliferation.docx

Data files: samples-publishGFP_A.CCI.xlsx, samples-publishGFP_D.IMG.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:37, Last updated: 15th Jan 2025 at 19:09

RNA Extraction - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_RNAseq.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_RNA.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:37, Last updated: 15th Jan 2025 at 19:09

Cell Culture - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240712_V1_GFP_CellCulture.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:30, Last updated: 15th Jan 2025 at 19:09

Cancer Cell Extravasation Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_Extravasation.docx

Data files: samples-publishGFP_A.CCE.xlsx, samples-publishGFP_D.IMG.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:34, Last updated: 15th Jan 2025 at 19:09

Cell Culture and Tumor Spheroid Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240129-V1_Cell-Culture-and-Tumor-Spheroid..., P.KAM-240129-V1_Monocyte-Isolation-iVas.docx

Data files: samples-publish2024-02-09-CEL.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:54, Last updated: 15th Jan 2025 at 17:58

Python packages

Millar group

The list of python packages used was obtained by typing inside the Docker image

pip list -- format==columns > python_packages_pip_installed.txt

This list the version of packages installed as we have observed issues related to the use of the most current version of some python packaged for example scipy

Submitter: Uriel Urquiza Garcia

Biological problem addressed: Gene Expression

Investigation: Absolute units for proteins in Arabidopsis cloc...

Study: Reproducibility documentation

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 4th Oct 2022 at 08:48, Last updated: 19th Dec 2024 at 11:28

(v.1.17.4)

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