Studies

An exploration on gene expression data was carried out on single-cell RNAseq analyses of bronchoalveolar lavages from nine COVID-19 patients, three moderate cases, one severe case and five critical cases (GSE145826) (doi: 10.1038/s41591-020-0901-9). To these data, single-cell RNA-sequencing from one COVID-19 lung biopsy, ~10 weeks after initial infection was added to represent persistent severe COVID19 patient group (3 weeks after symptom onset) (GSE163919). For this analysis, the epithelial cell ...

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes

Investigation files _I_Test

Modelling and experiments for FMv2 components.

Simulations, parameter sensitivity analysis etc. for FMv2

Modelling and experiments for FMv2 as a whole; Testing Framework Model version 2 (FMv2)

Modelling and experiments for FMv2 as a whole; Testing Framework Model version 2 (FMv2)

Modelling and experiments for FMv2 as a whole; Testing Framework Model version 2 (FMv2)

Model simulations compared to experimental data from the literature (publications from Mizuno lab are linked), testing the FMv2.

Modelling and experiments for FMv2 as a whole; Testing Framework Model version 2 (FMv2)

Follow-up to the validation experiments on FMv2, testing candidate mechanisms for high malate and fumarate accumulation in the Arabidopsis double mutant prr7prr9 and its parent accession Col. New collaborations with the groups of Teresa Fitzpatrick and TiMet partner Samuel Zeeman.

Assorted files prepared during the publication process of the FMv2, its validation and testing, mostly focussed on the Arabidopsis double mutant prr7prr9 and its parent accession Col. Data from other studies that are described separately, and linked by Atribution to the File records under this Study.

Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.

Abstract Background

The search ...

This study briefly shows how a Progress Curve (Time-Course) Analysis can look like.