Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology
SEEK ID: https://fairdomhub.org/people/1420
Location:
United States
ORCID: Not specified
Joined: 10th Sep 2019
Expertise: Not specified
Tools: Not specified

Related items
- Programmes (2)
- Projects (2)
- Institutions (1)
- Investigations (1+1)
- Studies (5)
- Assays (21+2)
- Data files (40)
- SOPs (22)
- Publications (1)
- Samples (2296)
Projects: IMPAcTB
Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis
Programme: MIT Superfund Research
Public web page: Not specified
Organisms: Not specified
Submitter: Dikshant Pradhan
Studies: Excision of mutagenic replication-blocking lesions suppresses cancer but...
Assays: GPT Assay – Data Attached, Mass Spectrometry Processing – Data Linked, Mass Spectrometry – Data Linked, Mouse Necropsy – Metadata, RaDR Image Machine Learning Analysis – Data Attached, Tissue Imaging – Metadata, Tissue Lysis – Metadata
Snapshots: No snapshots
Mycobacterium tuberculosis lung infection results in a complex multicellular structure: the granuloma. In some granulomas, immune activity promotes bacterial clearance, but in others, bacteria persist and grow. We identified correlates of bacterial control in cynomolgus macaque lung granulomas by co-registering longitudinal positron emission tomography and computed tomography imaging, single-cell RNA sequencing, and measures of bacterial clearance. Bacterial persistence occurred in granulomas ...
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: DNA Extraction – Metadata, NHP Tissue Collection – Metadata, Single Cell Sequencing – Metadata
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Tissue Extraction – Metadata
Snapshots: Snapshot 1, Snapshot 2
Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.
Abstract Background
The search ...
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Metadata, Patient Visit – Metadata
Snapshots: Snapshot 1
Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward doi: https://doi.org/10.1101/2021.01.12.426356
Submitter: Dikshant Pradhan
Investigation: MIT SRP
Assays: GPT Assay – Data Attached, Mass Spectrometry Processing – Data Linked, Mass Spectrometry – Data Linked, Mouse Necropsy – Metadata, RaDR Image Machine Learning Analysis – Data Attached, Tissue Imaging – Metadata, Tissue Lysis – Metadata
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Anti-Microbial Assay – Metadata, Functional Assay – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Tissue Collection – Metadata
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ENG-200806-V2_Short-Term-Collection-at-Necrop..., P.ENG-201008-V1_Med-Term-Collection-at-Necropsy...
Data files: samples-publish2021-03-30_16-25.xlsx, samples-publish2021-03-30_17-38.xlsx, samples-publish2021-09-20_22-36.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_16-04.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_15-51.xlsx, samples-publish2021-03-30_17-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_14-31.xlsx, samples-publish2021-03-30_15-51.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_17-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ESS-201123-V1_gpt-NextGen-Protocol.pdf
Data files: 10.1016.j.celrep.2021.108864_GPT_assay, D.GPT-samples-publish2021-12-13_23-22.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.BOO-200728-V1_2019_April_Bronchoscopy_Protoco..., P.BOO-200728-V1_BAL-SOP-Ver-3.0-DATED-05-Nov-20...
Data files: PAT-samples-publish2021-10-18_22-26.xlsx, PAV-samples-publish2021-10-18_22-32.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.BOO-210820-V1_Surface-staining-of-BAL-and-PBM..., P.BOO-210910-V1_Broncoscopy-Laboratory-Protoco_..., P.BOO-211014-V1_User-Manual_231944_smxx.pdf
Data files: D.FLOW-samples-publish2021-10-19_02-49.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: A.FLOW-samples-publish2021-10-22_00-50.xlsx, D.FILE-211016BOO-1_flowcytometry_10.1371.journa..., D.FILE-samples-publish2021-10-19_03-47.xlsx, D.FLOW-samples-publish2021-10-19_02-49.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: A.IMG-samples-publish2021-12-13_22-22.xlsx, WAD_RaDR_roi_extraction_10.1016.j.celrep.2021.1..., samples-publish2021-03-30_16-04.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx
Data files: D.LMX-211203ALT-10_FcR_luminex_FcyR3A_plasma.xlsx, D.LMX-211203ALT-1_isotype_luminex_IgG1_BAL.xlsx, D.LMX-211203ALT-2_isotype_luminex_IgA_BAL.xlsx, D.LMX-211203ALT-3_isotype_luminex_IgM_BAL.xlsx, D.LMX-211203ALT-4_isotype_luminex_IgG1_plasma.xlsx, D.LMX-211203ALT-5_isotype_luminex_IgA_plasma.xlsx, D.LMX-211203ALT-6_isotype_luminex_IgM_plasma.xlsx, D.LMX-211203ALT-7_FcR_luminex_FcyR2A_BAL.xlsx, D.LMX-211203ALT-8_FcR_luminex_FcyR3A_BAL.xlsx, D.LMX-211203ALT-9_FcR_luminex_FcyR2A_plasma.xlsx, D.LMX-samples-publish2022-01-27_23-57.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx
Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Antibody-Fc shifts alveolar macrophage metaboli...
Assays: Tissue Extraction – Metadata
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Antibody-Fc shifts alveolar macrophage metaboli...
Assays: Tissue Extraction – Metadata
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: NHP Tissue Collection – Metadata
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: NHP Tissue Collection – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Patient Visit – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Patient Visit – Metadata
Next-Gen GPT Assay Protocol
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: GPT Assay – Data Attached
Collection of Tissues at Necropsy of Short-Term Animals
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: Mouse Necropsy – Metadata
Medium-Term Tissue Collection at Necropsy
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: Mouse Necropsy – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract
Authors: Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
Date Published: 1st Mar 2021
Publication Type: Journal
DOI: 10.1016/j.celrep.2021.108864
Citation: Cell Reports 34(11):108864