Dikshant Pradhan
Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology
SEEK ID: https://fairdomhub.org/people/1420
Location:
United States
ORCID: Not specified
Joined: 10th Sep 2019
Expertise: Not specified
Tools: Not specified
Roles
Programme administrator
Their tagsRelated items
Projects: IMPAcTB
Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis
Programme: MIT Superfund Research
Public web page: Not specified
Submitter: Dikshant Pradhan
Studies: CD8+ lymphocytes are critical for early control of tuberculosis in macaques, Fc-FcγR interactions shift alveolar macrophage metabolism to promote Myc..., Fc-engineered antibodies leverage neutrophils to drive control of Mycoba..., Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resis..., Multimodal profiling of lung granulomas in macaques reveals cellular cor..., Robust IgM responses following intravenous vaccination with Bacille Calm..., T cell signatures of bacterial control among M. tuberculosis 'resisters'
Assays: All Metadata, Anti-Microbial Assay – Metadata, Antibody-Dependent Cellular Phagocytosis - Data Linked, Antibody-Dependent Neutrophil Phagocytosis - Data Linked, Bacterial Extraction - Metadata, DNA Extraction - Metadata, Digitally Barcoded Mtb Matrix Analysis - Data Attached, FC Receptor Binding Assay - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Attached, Flow Cytometry Analysis - Data Linked, Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Functional Assay – Metadata, Immunohistochemistry - Data Linked, Immunohistochemistry – Data Linked, Library Creation – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Necropsy – Metadata, NHP Tissue Collection – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, PET/CT Scan - Data Linked, Patient Visit - Metadata, Patient Visit - Metadata, Patient Visit - Metadata, Patient Visit – Metadata, Patient Visit – Metadata, Short Read Sequencing - Data Linked, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Single Cell Sequencing – Data Linked, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Extraction – Metadata, Titer Assay - Data Linked
Submitter: Dikshant Pradhan
Studies: Benthic fluxes of fluorescent dissolved organic material, salt and heat ..., Excision of mutagenic replication-blocking lesions suppresses cancer but..., Interaction of N-Nitroamines with Bincuelar Copper Complexs for Luminsec..., Molecular origins of mutational spectra produced by the environmental ca..., Novel In Vivo CometChip Reveals NDMA-Induced DNA Damage and Repair in Mu...
Assays: Absorption and Emission Spectroscopy - Data Linked, Absorption and Emission Spectroscopy Analysis - Data Linked, Chemical Challenge - Metadata, Chemical Synthesis - Metadata, Comet Chip - Data Linked, Comet Chip Analysis - Data Attached, Crystallography - Data Linked, Electron Paramagnetic Resonance - Data Linked, Extraction and Library Creation - Metadata, Field Water Sensor Run, GPT Assay - Data Attached, GPT Assay – Data Attached, Genome Alignment - Data Linked, High Resolution Mass Spectra - Data Linked, High Resolution Mass Spectra Analysis - Data Linked, Illumina Sequencing - Data Linked, Mass Spectrometry Processing – Data Linked, Mass Spectrometry – Data Linked, Mouse Necropsy – Metadata, Mutational Spectral Analysis - Data Attached, Necropsy - Metadata, Nuclear Magnetic Resonance Spectroscopy - Data Linked, Nuclear Magnetic Resonance Spectroscopy Analysis - Data Linked, RaDR Image Machine Learning Analysis – Data Attached, Tissue Collection - Metadata, Tissue Imaging – Metadata, Tissue Lysis – Metadata, X-ray Photoelectron Spectroscopy - Data Linked
Hannah P.Gideon, Travis K.Hughes, Constantine N.Tzouanas, Marc H.WadsworthII, Ang AndyTu, Todd M.Gierahn, Joshua M.Peters, Forrest F.Hopkins, Jun-RongWei, Conner Kummerlowe, Nicole L.Grant, Kievershen Nargan, Jia YaoPhuah, H. JacobBorish, Pauline Maiello, Alexander G.White, Caylin G.Winchell, Sarah K.Nyquist, Sharie Keanne C.Ganchua, Amy Myers, Kush V.Patel, Cassaundra L.Ameel, Catherine T.Cochran, Samira Ibrahim, Jaime A.Tomko, Lonnie JamesFrye, Jacob ...
Submitter: Dikshant Pradhan
Investigation: IMPAcTB
Assays: Immunohistochemistry – Data Linked, Library Creation – Metadata, NHP Necropsy – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing – Data Linked
Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
doi: https://doi.org/10.1101/2021.01.12.426356
Link to all of the Imaging done in this study: https://omero.mit.edu/webclient/?show=project-153 ...
Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.
Abstract: ...
Submitter: Dikshant Pradhan
Investigation: IMPAcTB
Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Patient Visit – Metadata, Tissue Collection - Metadata
Submitter: Dikshant Pradhan
Investigation: IMPAcTB
Assays: Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Tissue Extraction – Metadata
Development of an effective tuberculosis (TB) vaccine has suffered from an incomplete understanding of the correlates of protection against Mycobacterium tuberculosis (Mtb). Intravenous (i.v.) vaccination with Bacille Calmette–Guérin (BCG) provides nearly complete protection against TB in rhesus macaques, but the antibody response it elicits remains incompletely defined. Here we show that i.v. BCG drives superior antibody responses in the plasma and the lungs of rhesus macaques compared to ...
Submitter: Dikshant Pradhan
Investigation: IMPAcTB
Assays: Anti-Microbial Assay – Metadata, Functional Assay – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Tissue Collection – Metadata
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
DownloadBatch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Next-Gen GPT Assay Protocol
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Collection of Tissues at Necropsy of Short-Term Animals
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Medium-Term Tissue Collection at Necropsy
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Abstract
Authors: Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
Date Published: 1st Mar 2021
Publication Type: Journal
UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Date) , Scientist (Text) , DataType (Text) , Barcodes (Text) , Genes (Text) , Metadata (Text) , Protocol (Text) , Parent (Text) , Lab (Text)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , QCPlatform (Text) , QCAssay (Text) , Sequencer (Text) , ClusterDate (Date) , AnalyzedDate (Date) , CompleteDate (Date) , F_bp (Real number) , R_bp (Real number) , IndexInlineStartNT (Real number) , IndexInlineLength (Real number) , NumReads (Real number) , MaxReads (Real number) , TotalReads (Real number) , NumAligned (Real number) , 20mers (Real number) , Primer (Text) , FlowLane (Text) , PrepUser (Text) , Contamination (Text) , Notes (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExpressionKit (Text) , ExtractedMolecule (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text) , Mass (Real number) , MassUnits (Text) , Organ (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , StorageType (Text) , BALCollectedVolume (Real number) , BALCollectedVolumeUnits (Text) , BALInstilledVolume (Real number) , BALInstilledVolumeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , CellCount (Real number) , Notes (Text) , StudyID (Text) , SampleCollectionDate (Date) , Contact (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) *, Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Strain (Text) , StrainReference (Text) , Genotype (Text) , Phenotype (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Source (Text) , SourceFacility (Text) , ParentM (Text) , ParentF (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Real number) , Treatment1Units (Text) , Treatment1Time (Real number) , Treatment1TimeUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , Treatment2Reference (Text) , Treatment2Dose (Real number) , Treatment2Units (Text) , Treatment2Time (Real number) , Treatment2TimeUnits (Text) , SacrificeDate (Date) , Notes (Text) , Disease (Text) , DiseaseReference (Text) , DiseaseStage (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text) , QC_notes (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Panel (Text) , Analyte (Text) , Instrument (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , StorageLocation (Text) , StorageSite (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , TreatmentType (Text) , Treatment (Text) , TreatmentDose (Real number) , TreatmentDoseUnits (Text) , TreatmentTime (Real number) , TreatmentTimeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , Concentration (Real number) , ConcentrationUnits (Text) , Note (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text)
Not specified
UID (Text) *, Name (Text) *, ID (Text) , DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , SourceFacility (Text) , Notes (Text) , Contact (Text) , Scientist (Text) , CoScientist (Text) , Publish_uri (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Date (Date) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Date (Date) , Treatment2Dose (Real number) , Treatment2DoseUnits (Text) , NecropsyDate (Date) , Cohort (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , ModelName (Text) , ModelType (Text) , ModelDescription (Text) , Domain (Text) , Lab (Text) , Scientist (Text) *, SourceCode (Text) , Parent (Text) , SampleCreationDate (Date) , Docker (Text) , Notes (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , Scientist (Text) , CoScientist (Text) , Protocol (Text) , Lab (Text) , Phage (Text) , CellLine (Text) , Parent (Text) , PlaqueTiter (Text) , PlaqueTiterCount (Real number) , ColonyTiter (Text) , ColonyTiterCount (Real number) , TiterEfficiency (Real number) , Plate (Text) , MutationFreq (Real number)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Genotype (Text) , StorageType (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , SacrificeDate (Date)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Concentration (Real number) , ConcentrationUnits (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , Parent (Text) , QuantificationMethod (Text) , File_SearchEngineOutput (Text) , Link_SearchEngineOutput (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , ExperimentType (Text) , ParentList (Text) , Instrument (Text) , Scientist (Text) , Labels (Text) , QCInstrument (Text) , QCUser (Text) , Calibration (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , ProteinSeqFile (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , CreationDate (Date) , Parent (Text) , SlideStain (Text) , SlideStain2 (Text) , SlideAntibody (Text) , SlideAntibodyConcentration (Text) , Foci (Text) , NumFoci (Real number) , Instrument (Text) , ImageArea (Real number) , ObjectArea (Real number) , AreaUnits (Text) , Contact (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Organ (Text) , OrganDetail (Text) , StorageType (Text)
Not specified
