D.SEQ
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| UID* | Text | Not specified | - | - |
| Name | Text | Not specified | - | - |
| File_PrimaryData | Text | Not specified | - | - |
| Scientist | Text | Not specified | - | - |
| SampleCreationDate | Date | Not specified | - | - |
| Protocol | Text | Not specified | - | - |
| Link_PrimaryData | Text | Not specified | - | - |
| Parent | Text | Not specified | - | - |
| DataType | Text | Not specified | - | - |
| SequencingType | Text | Not specified | - | - |
| QCPlatform | Text | Not specified | - | - |
| QCAssay | Text | Not specified | - | - |
| Sequencer | Text | Not specified | - | - |
| ClusterDate | Date | Not specified | - | - |
| AnalyzedDate | Date | Not specified | - | - |
| CompleteDate | Date | Not specified | - | - |
| F_bp | Real number | Not specified | - | - |
| R_bp | Real number | Not specified | - | - |
| IndexInlineStartNT | Real number | Not specified | - | - |
| IndexInlineLength | Real number | Not specified | - | - |
| NumReads | Real number | Not specified | - | - |
| MaxReads | Real number | Not specified | - | - |
| TotalReads | Real number | Not specified | - | - |
| NumAligned | Real number | Not specified | - | - |
| 20mers | Real number | Not specified | - | - |
| Primer | Text | Not specified | - | - |
| FlowLane | Text | Not specified | - | - |
| PrepUser | Text | Not specified | - | - |
| Contamination | Text | Not specified | - | - |
| Notes | Text | Not specified | - | - |
| ReagentManufacturer | Text | Not specified | - | - |
| ReagentCatalogNum | Text | Not specified | - | - |
| LibraryStrategy | Text | Not specified | - | - |
| LibrarySource | Text | Not specified | - | - |
| LibrarySelection | Text | Not specified | - | - |
| ExpressionKit | Text | Not specified | - | - |
| ExtractedMolecule | Text | Not specified | - | - |
Tags
Not specified Creators and SubmitterViews: 691 Downloads: 21
Created: 24th Mar 2022 at 20:15
Last updated: 28th May 2026 at 13:33
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AttributionsNone
Related items
Projects: Hi-IMPAcTB, MIT SRP
Institutions: Massachusetts Institute of Technology
Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology
Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab, NExtSEEK Independent Projects
Web page: https://nextseek.mit.edu/
About
This project houses all the publicly available datasets generated by the Hi-IMPAcTB consortium over the course of its 7+ years.
What is Hi-IMPAcTB?
Hi-IMPAcTB is an ambitious endeavor bringing together a team of international, interdisciplinary researchers to improve our understanding of host-pathogen interactions in the context of tuberculosis (TB). Funded by a multi-center contract from the NIH, the long-term goal of the consortium is to enable principled vaccine design by improving ...
Programme: NExtSEEK
Public web page: https://grantome.com/grant/NIH/75N93019C00071-0-9999-1
