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MESI-STRAT Newsletter September 2023 english

MESI-STRAT

No description specified

Creators: Petra Engele, Leon Regin

Submitter: Petra Engele

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th Aug 2023 at 13:13

Views: 95, Downloads: 0

MESI-STRAT Newsletter September 2023 deutsch

MESI-STRAT

No description specified

Creators: Petra Engele, Leon Regin

Submitter: Petra Engele

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th Aug 2023 at 13:10

Views: 92, Downloads: 1

Deliverable 2.2 - Identification of relevant data formats, standards and terminologies for interoperability

nfdi4health - German National Research Data Infrastructure for Personal Health Data

No description specified

Creator: Carina Vorisek

Submitter: Carina Vorisek

DOI: 10.15490/fairdomhub.1.document.4232.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 23rd Aug 2023 at 21:13

Views: 125, Downloads: 0

Analysis of malaria parasite volumes per stage

Whole body modelling of glucose metabolism in malaria patients

No description specified

Creators: Dawie van Niekerk, Jacky Snoep

Submitter: Dawie van Niekerk

Investigations: Glucose metabolism in Plasmodium falciparum inf...

Studies: Intra-erythrocytic malaria parasite volumes

Assays: Malaria parasite volume determinations

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Created: 18th Aug 2023 at 09:31, Last updated: 18th Aug 2023 at 09:36

Views: 99, Downloads: 1

Report: Selection of HepG2 for MCAD-KO

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

(Show All)

A short description of the experiments conducted to decide on HepG2 cells as the appropriate line for the generation of an MCAD knockout. IHH, Hep3B, HepG2, and HUH-7 cells were all consdered.

Creators: Christoff Odendaal, Barbara Bakker, Terry G.J. Derks, Ligia Akemi Kiyuna, Emmalie Jager

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Model validation

Assays: HepG2 oxygen consumption

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Created: 7th Jun 2023 at 16:39, Last updated: 13th Jun 2023 at 16:53

Views: 342, Downloads: 4

Summary of WG1 survey

WG1 - Compound libraries coordination and integration of compound design

This survey is organized by WG1 (Compound libraries coordination and integration of compound design) of COST Action CA21111 "OneHealthDrugs" and collects information from COST Action members about the handling of chemical compound information and the usage of compound databases/repositories. The results will help to coordinate and integrate compound data from different resources for searching and screening purposes by the COST Action participants.

Creator: Ulrike Wittig

Submitter: Ulrike Wittig

DOI: 10.15490/fairdomhub.1.document.4187.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 25th May 2023 at 10:19

Views: 400, Downloads: 9

Abstract Book

WG1 - Compound libraries coordination and integration of compound design, WG2 - Integration of early phase studies and low environmental impact actions

No description specified

Creator: Ulrike Wittig

Submitter: Ulrike Wittig

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 10th May 2023 at 12:10, Last updated: 15th May 2023 at 13:33

Views: 240, Downloads: 5

Workshop Agenda

WG1 - Compound libraries coordination and integration of compound design, WG2 - Integration of early phase studies and low environmental impact actions

No description specified

Creator: Ulrike Wittig

Submitter: Ulrike Wittig

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 10th May 2023 at 12:01, Last updated: 15th May 2023 at 13:32

Views: 243, Downloads: 3

Extending Eulerian Parameter Inference to Single Cell Data documentation

Working Group Nicole Radde

This contains the final version of my thesis as well as the implemented figures as .pgf and .svg files.

Creator: Aaron Laier

Submitter: Aaron Laier

Investigations: 1 hidden item

Studies: Extending Eulerian Parameter Inference to Singl...

Assays: Final Report

Created: 12th Apr 2023 at 20:23

Views: 201, Downloads: 1

Supplementary file 3

FAIR Functional Enrichment

Figures showing the changes of edges and terms.

Creator: Yi Chen

Submitter: Yi Chen

Investigations: FAIR Functional Enrichment: Assessing and Model...

Studies: FAIR Functional Enrichment

Assays: FAIR Functional Enrichment

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Created: 11th Feb 2023 at 00:25

Views: 248, Downloads: 5

Compound library file

NL-Bioimaging FAIR Metadata Templates

This document is associated with metadata file and describes compounds used in this study.

Creator: Rohola Hosseini

Submitter: Rohola Hosseini

Investigations: Minimal Information for High Content Screening ...

Studies: MIHCSME templates

Assays: MIHCSME template example for “Temporal single c...

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Created: 3rd Feb 2023 at 12:55, Last updated: 3rd Feb 2023 at 15:02

Views: 271, Downloads: 11

COMBINE 2022 Program

COMBINE Multicellular Modelling

Program of COMBINE sessions on 6th, 7th Oct. 2022 and COMBINE Forum on 8th Oct. 2022.

Creator: Lutz Brusch

Submitter: Lutz Brusch

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 31st Jan 2023 at 22:47

Views: 296, Downloads: 3

Prov-O Representation for an enrichment analysis experiment

FAIR Functional Enrichment

Prov-O Representation for an enrichment analysis experiment on differentially expressed RNA-Seq data, analysed with Enrichr and 2021 version of GO. Rectangle represents Activity, eclipse represents entity and rhombus represents agents

Creator: Yi Chen

Submitter: Yi Chen

Investigations: FAIR Functional Enrichment: Assessing and Model...

Studies: FAIR Functional Enrichment

Assays: FAIR Functional Enrichment

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Created: 13th Jan 2023 at 22:33

Views: 277, Downloads: 1

MESI-STRAT Newsletter 2/2022 deutsch

MESI-STRAT

Bericht über die neuesten Aktiväten des Brustkrebsforschungsprojektes MESI-STRAT

Creators: Petra Engele, Laia Monserrat

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 19th Dec 2022 at 16:18

Views: 295, Downloads: 0

MESI-STRAT Newsletter 1/2022 deutsch

MESI-STRAT

Neuigkeiten aus dem MESI-STRAT Projekt und Konsortium

Creators: Cecilia Barile, Petra Engele, Anna-Sophia Egger

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 22nd Sep 2022 at 13:56, Last updated: 19th Dec 2022 at 16:10

Views: 407, Downloads: 0

HE steatosis pattern analysis: Generic Classification 128

SteaPKMod

steatosis pattern analysis report using Histokat, a proprietary software based on a machine-learning algorithm created by Fraunhofer MEVIS

Creators: Mohamed Albadry, Uta Dahmen

Submitter: Mohamed Albadry

Investigations: 1 hidden item

Studies: Periportal steatosis in mice affects distinct p...

Assays: Hematoxylin-Eosin (HE) staining

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Created: 19th Jul 2022 at 13:56, Last updated: 8th Dec 2022 at 18:47

Views: 293, Downloads: 3

HE-Steatosis analysis: Steatosis Quantification

SteaPKMod

Steatosis Quantification (Lipid droplet analysis) report using Histokat, a proprietary software based on a machine-learning algorithm created by Fraunhofer MEVIS

Creators: Mohamed Albadry, Uta Dahmen

Submitter: Mohamed Albadry

Investigations: 1 hidden item

Studies: Periportal steatosis in mice affects distinct p...

Assays: Hematoxylin-Eosin (HE) staining

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Created: 19th Jul 2022 at 13:53, Last updated: 8th Dec 2022 at 18:47

Views: 254, Downloads: 4

2022-12-08_ Histology Quant., CYP activity, Protein, TG, AUC

SteaPKMod

Raw data used for Steatosis and CYP quantification and TG, PK-data, AUC, t-halflife and C-max

Creator: Mohamed Albadry

Submitter: Mohamed Albadry

Investigations: 1 hidden item

Studies: Periportal steatosis in mice affects distinct p...

Assays: SteaPk-data Histology Quant., CYP activity, Pro...

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Created: 8th Dec 2022 at 14:52, Last updated: 8th Dec 2022 at 18:45

Views: 329, Downloads: 2

2022-07-18_ Experimental data- Drug injection and Pharmacokinetics_Stea pk - documentation

SteaPKMod

Excel file involves all experiment data including feeding plan, sampling plan, and the Pharmacokinetic data results

Creators: Mohamed Albadry, Uta Dahmen

Submitter: Mohamed Albadry

Investigations: 1 hidden item

Studies: Periportal steatosis in mice affects distinct p...

Assays: Animal experiment and Pharmacokinetics data

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Created: 18th Jul 2022 at 19:11, Last updated: 8th Dec 2022 at 18:45

Views: 258, Downloads: 6

Model | Supplementary table

EbN1 Systems Biology

Supplementary table containing all reactions, genes, and metabolites involved in the metabolic model iAA835 .

Creator: Julia Koblitz

Submitter: Julia Koblitz

Investigations: Systems biology investigation of aromatic compo...

Studies: Metabolic Modelling

Assays: Metabolic modeling of EbN1

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Created: 15th Jul 2022 at 08:43, Last updated: 13th Oct 2022 at 09:44

Views: 320, Downloads: 3

MESI-STRAT Newsletter 1/2022 (english)

MESI-STRAT

News about the MESI-STRAT project and consortium

Creators: Cecilia Barile, Petra Engele, Anna-Sophia Egger

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 22nd Sep 2022 at 13:54, Last updated: 22nd Sep 2022 at 13:57

Views: 395, Downloads: 0

output/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_03_SxPv12_limmavoom_DE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_03_SxPv12_limmavoom_DE-R

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Created: 10th Apr 2022 at 22:35, Last updated: 21st Sep 2022 at 12:48

Views: 358, Downloads: 3

scripts/SxPv12_limmavoom_DE.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_03_SxPv12_limmavoom_DE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_03_SxPv12_limmavoom_DE-R

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Created: 10th Apr 2022 at 22:37, Last updated: 21st Sep 2022 at 12:48

Views: 360, Downloads: 3

input/nbe_AUS-AUGUSTUS_genes_2019-12-02.gmt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA

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Created: 10th Apr 2022 at 22:37, Last updated: 21st Sep 2022 at 12:48

Views: 341, Downloads: 3

input/version1-2.cls

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA

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Created: 10th Apr 2022 at 22:38, Last updated: 21st Sep 2022 at 12:48

Views: 372, Downloads: 3

reports/Reverse_strand_mapping.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_02_SxPv12_mapping-CLC/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_02_SxPv12_mapping-CLC

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Created: 11th Apr 2022 at 15:32, Last updated: 21st Sep 2022 at 12:48

Views: 413, Downloads: 3

output/MJU_24112021/gseaparsing.pl

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA

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Created: 11th Apr 2022 at 16:09, Last updated: 21st Sep 2022 at 12:48

Views: 340, Downloads: 3

output/MJU_24112021/MJU_24112021_0_Sources.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA

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Created: 11th Apr 2022 at 16:09, Last updated: 21st Sep 2022 at 12:48

Views: 381, Downloads: 4

reports/SXP12_434_1_fastqc.html

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_01_SxPv12_fastq-QC/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_01_SxPv12_fastq-QC

Download

Created: 10th Apr 2022 at 19:33, Last updated: 21st Sep 2022 at 12:47

Views: 454, Downloads: 3

reports/SXP12_434_1_fastqc.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/_A_01_SxPv12_fastq-QC/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T21_SXPsysbio

Studies: _S_P4_SxP12-newG-DE

Assays: _A_01_SxPv12_fastq-QC

Download

Created: 10th Apr 2022 at 19:33, Last updated: 21st Sep 2022 at 12:47

Views: 440, Downloads: 3

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