Sample types

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (Text)

Tags: Not specified

Created: 28th Sep 2022 at 17:03

test controlled voc 2

Perennial ryegrass

No description specified

Attributes: att1 (Controlled Vocabulary - CV test) *

Tags: Not specified

Created: 14th Jul 2022 at 09:41

A.SCCLUST

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text)

Tags: Not specified

Created: 7th Apr 2022 at 23:16

A.SCEXPR

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Date) , Scientist (Text) , DataType (Text) , Barcodes (Text) , Genes (Text) , Metadata (Text) , Protocol (Text) , Parent (Text) , Lab (Text)

Tags: Not specified

Created: 7th Apr 2022 at 23:14

D.SEQ

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , QCPlatform (Text) , QCAssay (Text) , Sequencer (Text) , ClusterDate (Date) , AnalyzedDate (Date) , CompleteDate (Date) , F_bp (Real number) , R_bp (Real number) , IndexInlineStartNT (Real number) , IndexInlineLength (Real number) , NumReads (Real number) , MaxReads (Real number) , TotalReads (Real number) , NumAligned (Real number) , 20mers (Real number) , Primer (Text) , FlowLane (Text) , PrepUser (Text) , Contamination (Text) , Notes (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExpressionKit (Text) , ExtractedMolecule (Text)

Tags: Not specified

Created: 24th Mar 2022 at 21:15

TIS

MIT SRP, IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text) , Mass (Real number) , MassUnits (Text) , Organ (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , StorageType (Text) , BALCollectedVolume (Real number) , BALCollectedVolumeUnits (Text) , BALInstilledVolume (Real number) , BALInstilledVolumeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , CellCount (Real number) , Notes (Text) , StudyID (Text) , SampleCollectionDate (Date) , Contact (Text)

Tags: Not specified

Created: 14th Mar 2022 at 18:46

MUS

MIT SRP, IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) *, Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Strain (Text) , StrainReference (Text) , Genotype (Text) , Phenotype (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Source (Text) , SourceFacility (Text) , ParentM (Text) , ParentF (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Real number) , Treatment1Units (Text) , Treatment1Time (Real number) , Treatment1TimeUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , Treatment2Reference (Text) , Treatment2Dose (Real number) , Treatment2Units (Text) , Treatment2Time (Real number) , Treatment2TimeUnits (Text) , SacrificeDate (Date) , Notes (Text) , Disease (Text) , DiseaseReference (Text) , DiseaseStage (Text)

Tags: Not specified

Created: 14th Mar 2022 at 18:29

A.LMX

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text) , QC_notes (Text)

Tags: Not specified

Created: 27th Jan 2022 at 21:35

D.LMX

IMPAcTB

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Panel (Text) , Analyte (Text) , Instrument (Text)

Tags: Not specified

Created: 27th Jan 2022 at 21:29

CEX

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) , StorageLocation (Text) , StorageSite (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , TreatmentType (Text) , Treatment (Text) , TreatmentDose (Real number) , TreatmentDoseUnits (Text) , TreatmentTime (Real number) , TreatmentTimeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , Concentration (Real number) , ConcentrationUnits (Text) , Note (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text)

Tags: Not specified

Created: 27th Jan 2022 at 21:12

NHP

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) *, ID (Text) , DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , SourceFacility (Text) , Notes (Text) , Contact (Text) , Scientist (Text) , CoScientist (Text) , Publish_uri (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Date (Date) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Date (Date) , Treatment2Dose (Real number) , Treatment2DoseUnits (Text) , NecropsyDate (Date) , Cohort (Text)

Tags: Not specified

Created: 27th Jan 2022 at 20:58

A.IMG

MIT SRP

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , ModelName (Text) , ModelType (Text) , ModelDescription (Text) , Domain (Text) , Lab (Text) , Scientist (Text) *, SourceCode (Text) , Parent (Text) , SampleCreationDate (Date) , Docker (Text) , Notes (Text)

Tags: Not specified

Created: 13th Dec 2021 at 15:30

A.FLOW

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text) , QC_notes (Text) , File_CompensationData (Text) , Link_CompensationData (Text) , Checksum_CompensationData (Text)

Tags: Not specified

Created: 18th Oct 2021 at 22:13

D.FILE

IMPAcTB

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text)

Tags: Not specified

Created: 18th Oct 2021 at 21:53

D.FLOW

IMPAcTB

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol_CellPrep (Text) , Parent (Text) , Protocol_AntibodyStaining (Text) , Protocol (Text) , Instrument (Text) , InstrumentUser (Text) , Analyte (Text)

Tags: Not specified

Created: 18th Oct 2021 at 20:57

TIS

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Text) , Parent (Text) , Type (Text) , CollectedVolume (Real number) , CollectedVolumeUnits (Text) , InstilledVolume (Real number) , InstilledVolumeUnits (Text) , CellCount (Real number) , Notes (Text)

Tags: Not specified

Created: 18th Oct 2021 at 20:21

PAV

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Text) , Type (Text) , CollectionTime (Integer) , Parent (Text) , VisitFacility (Text) , VisitLocation (Text) , Notes (Text)

Tags: Not specified

Created: 18th Oct 2021 at 20:12, Last updated: 18th Oct 2021 at 20:17

PAT

IMPAcTB

No description specified

Attributes: UID (Text) *, Name (Text) , ID (Text) , Household (Text) , Age (Integer) , Sex (Text) , StatusHIV (Text) , Classification (Text) , Notes (Text) , Contact (Text) , Scientist (Text) , Scarring (Text) , Height (Real number) , HeightUnits (Text) , Weight (Real number) , WeightUnits (Text) , BMI (Text) , YearsOnFollowup (Real number)

Tags: Not specified

Created: 18th Oct 2021 at 20:05, Last updated: 18th Oct 2021 at 20:15

D.GPT

MIT SRP

No description specified

Attributes: UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , Scientist (Text) , CoScientist (Text) , Protocol (Text) , Lab (Text) , Phage (Text) , CellLine (Text) , Parent (Text) , PlaqueTiter (Text) , PlaqueTiterCount (Real number) , ColonyTiter (Text) , ColonyTiterCount (Real number) , TiterEfficiency (Real number) , Plate (Text) , MutationFreq (Real number)

Tags: Not specified

Created: 20th Sep 2021 at 17:30

MUS

MIT SRP

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Genotype (Text) , StorageType (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , SacrificeDate (Date)

Tags: Not specified

Created: 31st Mar 2021 at 21:09

CEX

MIT SRP

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Concentration (Real number) , ConcentrationUnits (Text)

Tags: Not specified

Created: 31st Mar 2021 at 20:55

A.MSP

MIT SRP

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , Parent (Text) , QuantificationMethod (Text) , File_SearchEngineOutput (Text) , Link_SearchEngineOutput (Text)

Tags: Not specified

Created: 31st Mar 2021 at 20:22

D.MSP

MIT SRP

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , ExperimentType (Text) , ParentList (Text) , Instrument (Text) , Scientist (Text) , Labels (Text) , QCInstrument (Text) , QCUser (Text) , Calibration (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , ProteinSeqFile (Text)

Tags: Not specified

Created: 31st Mar 2021 at 20:16

D.IMG

MIT SRP

No description specified

Attributes: UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , CreationDate (Date) , Parent (Text) , SlideStain (Text) , SlideStain2 (Text) , SlideAntibody (Text) , SlideAntibodyConcentration (Text) , Foci (Text) , NumFoci (Real number) , Instrument (Text) , ImageArea (Real number) , ObjectArea (Real number) , AreaUnits (Text) , Contact (Text)

Tags: Not specified

Created: 31st Mar 2021 at 20:08

TIS

MIT SRP

No description specified

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Organ (Text) , OrganDetail (Text) , StorageType (Text)

Tags: Not specified

Created: 31st Mar 2021 at 19:59

PAH and PFAS chemistry in vivo I

Systems toxicology of Atlantic cod

Concentrations of PAH metabolites in bile and PFAS parent compounds in liver

Attributes: Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gender (String) , PFOA (Real number) , PFNA (Real number) , PFTrDA (Real number) , PFOS (Real number) , 1-OH-Naphthalene (Real number) , 2-OH-Naphthalene (Real number) , 1-OH-Phenanthrene (Real number) , 1-OH-Pyrene (Real number)

Tags: Not specified

Created: 4th May 2020 at 07:29

Liver qPCR cyp1a and acox1 in vivo

Systems toxicology of Atlantic cod

No description specified

Attributes: Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , cyp1a (Real number) , acox1 (Real number)

Tags: Not specified

Created: 28th Apr 2020 at 12:17

Comet assay

Systems toxicology of Atlantic cod

Measurement of tail intensities in the Comet Assay - used in in vivo 1

Attributes: Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Tail intensity (%) (Real number)

Tags: Not specified

Created: 28th Apr 2020 at 11:40

Plasma parameters

Systems toxicology of Atlantic cod

Measurement of cholinesterase, ALAT and ASAT activities + cortisol and total protein levels - in vivo studies

Attributes: Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (Text) , Cholinesterase (Real number) , Cortisol (Real number) , ASAT (Real number) , ALAT (Real number) , Protein, total (Real number)

Tags: Not specified

Created: 11th Jun 2019 at 08:38

Chemistry of chlorpyrifos-methyl and TCP in liver and bile

Systems toxicology of Atlantic cod

Template for chemical quantification of CPM and TCP in liver and bile.

Attributes: Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (String) , Liver CPM (Real number) , Liver TCP (Real number) , Bile CPM (Real number) , Bile TCP (Real number)

Tags: Not specified

Created: 7th Jun 2019 at 16:19