SampleTypes
Sample type representing the old BioSample model available to SysMO and VirtualLiver
Sample ID or name (String) *, Cell culture name (String) *, Cell culture lab identifier (String) , Cell culture start date (Date) , Cell culture growth type (Controlled Vocabulary) , Cell culture comment (Text) , Cell culture provider name (String) , Cell culture provider identifier (String) , Cell culture strain (SEEK Strain) *, Sample lab identifier (String) *, Sampling date (Date) , Age at sampling (Integer) ( s ) , Sample provider name (String) , Sample provider identifier (String) , Sample comment (Text) , Sample organism part (Controlled Vocabulary)
Not specified
SAMPLE TYPE to describe samples of CEN.PK-113-7D yeast strain upon metabolic perturbation of the steady state culture by glucose pulse
SEEK ID (Integer) *, STRAIN (SEEK Strain) , Genotype (String) , Cell culture ID (String) , Cell culture start date (Date) , Glucose pulse (concentration) (Integer) ( g/L ) , Sampling date (Date) , Time after glucose pulse (Integer) ( s ) , Cell part (Controlled Vocabulary) , Age at sampling (Integer) ( h ) *
chemostat_yeast_anaerobic
Sample ID (String) *, time relative to glucose pulse time point (Real number) ( s ) , dilution_rate (Real number) ( h-1 ) , gas_flow (Real number) ( L/min ) , Strain in SEEK (SEEK Strain) , Genotype (String) , Phenotype (String) , Comments (String) , Treatment: glucose pulse (Real number) ( g/L ) , organism/cell part (Controlled Vocabulary) , Culture description (String) , Culture_start_date (Date time) , Date_at_sampling (Date time) , Age_at_sampling_hours (Real number) ( h ) , Description (String)
Not specified
test for SysMetEx1
seekid (String) *, strain 1 org 1 (SEEK Strain) , strain2 org 2 (SEEK Strain) , strain3 org 3 (String) , parent sample id (SEEK Sample - YEAST_chemostat_steady_state_culture)
Not specified
Sample type for continuous and batch cultures with up to 3 Organisms
Cell_Culture_ID (String) *, Culture_Start_Date (Date time) , Culture_End_Date (Date time) , Origin (String) , SOP (Web link) , Comments (Text) , Type of Culture (Controlled Vocabulary) , Organism1 (SEEK Strain) , Inoculum1 (Real number) , AddDate1 (Date time) , Organism2 (SEEK Strain) , Inoculum2 (Real number) , AddDate2 (Date time) , Organism3 (SEEK Strain) , Inoculum3 (Real number) , AddDate3 (Date time)
Not specified
Based on standard description of Pseudomonas putida strain from Pseudomonas Gene DB http://www.pseudomonas.com/
Organism/Strain Name (String) *, Species (String) *, Strain (String) *, Subspecific Genetic Lineage (String) , Description/Title (String) *, Scaffolds (String) , Contigs (String) , Contig (String) , Assembly Level (String) , Percent GC (Integer) ( % ) , Number of Annotated Genes (Integer) , References (String) , Partial Genes (String) , Provider Name (String) , Provider email (String) , Date Collected (Date) *, NCBI ID (Web link) , Genotype (String) , Phenotype (String)
Not specified
STRAIN EPP
STRAIN description (String) *, EPP (Empower putida) Code (String) *, Name (String) *, Previous Strain (NCBI ID) (String) *, Modification Made (description (String) , Genotype : gene name (String) , Genotype : modification (String) , Original Strain (String) *, Methods of Verification of Modification (String) , Function of the Strain (Phenotype) (String) , Date of Creation (Date) *, Created by (String) *, Contact to ask from (String) , Publication it was used (String) , Comment (String)
Not specified
PATIENT Description
Patient Provider ID (String) *, Sex (Controlled Vocabulary) *, Age (Integer) ( yr ) *, Body height (Integer) *, BMI (body mass index) (Integer) , Diagnosis (String) , Side diagnosis (String) , Provider contact (Email address)
Not specified
Sample_geo_accession
Sample_accession (String) *, Sample_title (String) *, Sample_organism_ch1 (String) *, Sample_characteristics_ch1 (String) *
Not specified
Fastq ID (SEEK Sample - Library) *, Fastq position (Web link) *
Not specified
ID (String) *, Name (String) *
Not specified
Library ID (String) *, Sample ID (SEEK Sample - Samples for dCod)
Not specified
