Data files

1063 Data files visible to you, out of a total of 1623

Report of the Data Management Foundry Workshop,
19th-20th of March, 2012, Vienna, Austria

Creators: Natalie Stanford, Katy Wolstencroft, Olga Krebs, Stuart Owen, Carole Goble, Wolfgang Müller

Contributor: Natalie Stanford

No description specified

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

No description specified

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

No description specified

Creator: Theresa Kouril

Contributor: Theresa Kouril

incubations with yeast enzymes at 30C

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

No description specified

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

No description specified

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

metabolite quantification via enzymatic analysis

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

No description specified

Creators: Theresa Kouril, Jacky Snoep

Contributor: Theresa Kouril

PGK yeast without recycling of ATP

Creators: Jacky Snoep, Theresa Kouril

Contributor: Jacky Snoep

PGK yeast with recycling of ATP

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creator: Fatemeh Zamanzad Ghavidel

Contributor: Fatemeh Zamanzad Ghavidel

No description specified

Creator: Fatemeh Zamanzad Ghavidel

Contributor: Fatemeh Zamanzad Ghavidel

No description specified

Creator: Fatemeh Zamanzad Ghavidel

Contributor: Fatemeh Zamanzad Ghavidel

No description specified

Creator: Fatemeh Zamanzad Ghavidel

Contributor: Fatemeh Zamanzad Ghavidel

No description specified

Creator: Fatemeh Zamanzad Ghavidel

Contributor: Fatemeh Zamanzad Ghavidel

No description specified

Creator: Theresa Kouril

Contributor: Theresa Kouril

Supplementary file required by main Zip archive file for file extraction.

Creators: Helge Stark, Trong Khoa Pham, Phil Wright

Contributor: Helge Stark

Cells of S. solfataricus were grown on either caseinhydrolysate or D-glucose (reference) as sole carbon source.

Creator: Helge Stark

Contributor: Helge Stark

The distribution of enzymes involved in oxidative Stickland reactions among archaea was estimated using BLAST searches (BLOSUM62) with the protein sequences of acetate-CoA ligase (EC 6.2.1.13, ACS), ketoisovalerate oxidoreductase (EC 1.2.7.7, BC-OR) and indolepyruvate oxdoreductase (EC 1.2.7.8, AR-OR) from Pyrococcus furiosus (Pfu) and Sulfolobus solfataricus (Sso) against all archaea. Positive results are indicated by a '+' (homologue found, e-value < 1e-20) and negative results by a '-' (no
...

Creator: Helge Stark

Contributor: Helge Stark

Sulfolobus solfataricus P2 was cultivated on 1 % Caseinhydrolysate. Samples of the culture supernatants were taken at regular intervalls and analyzed by GC-MS. To evaluate the stability of amino acids under cultivation conditions an additional non-inoculated control culture was also analyzed.

Creators: Jacqueline Wolf, Dietmar Schomburg, Meina Neumann-Schaal, Julia Hofmann

Contributor: Jacqueline Wolf

Intracellular metabolome analysis of S. solfataricus P2 grown on caseinhydrolysate or D-glucose as sole carbon source.
Samples were analyzed with GC-MS. CoA derivatives were analyzed with LC-MS.

Creators: Jacqueline Wolf, Dietmar Schomburg

Contributor: Jacqueline Wolf

These files contain the output results from Phenyx searching, providing all necessary information for matching MS data with protein database.

Creators: Jacqueline Wolf, Trong Khoa Pham, Phil Wright

Contributor: Jacqueline Wolf

This file contains the results from proteome analysis of Sulfolobus solfataricus grown on Caseinhydrolysate as carbon source (growth on D-glucose served as reference condition).

Creators: Jacqueline Wolf, Trong Khoa Pham, Phil Wright

Contributor: Jacqueline Wolf

Raw MS data files of the comparison of Sulfolobus solfataricus grown on either caseinhydrolysate or D-glucose. The numbers represents the fractions collected from the HPLC run (e.g. 22 indicates that this sample was collected from 21 min to 22 min). For MS analysis every two fractions were combined, indicated by double numbers (e.g. 80-81: combined fractions 80 and 81). Furhter all combined fractions were run twice on the MS.
Zip archive. Requires the supplementary .z01, .z02 and .z03 files for
...

Creators: Helge Stark, Trong Khoa Pham, Phil Wright

Contributor: Helge Stark

Supplementary file required by main Zip archive file for file extraction.

Creators: Helge Stark, Trong Khoa Pham, Phil Wright

Contributor: Helge Stark

Supplementary file required by main Zip archive file for file extraction.

Creators: Helge Stark, Trong Khoa Pham, Phil Wright

Contributor: Helge Stark

Master file, aggregates metabolite concentrations inside and outside the cell, protein copy number and flux estimates for metabolites in the core model. Based on all internal metabolite concentrations, external metabolite concentrations from growth curve data, flux of glucose, lactate and acetate based on growth curve data and protein copy number data for enzyme concentrations. Combines absolute and relative measurements and metabolomics measurements from different experiment to get an as complete
...

Creator: Niels Zondervan

Contributor: Niels Zondervan

No description specified

Creator: Alexey Kolodkin

Contributor: Alexey Kolodkin

Protein copy number estimates, Mean and SD based on multiple proteomics experiments.
Compatible with internal and external metabolite measurements for Growth curve A.
Used as training data for the model

Creator: Niels Zondervan

Contributor: Niels Zondervan

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