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This archive contains influx software input, output and model files used to estimate in vivo reaction rates of B. methanolicus on methanol, mannitol, and arabitol for the paper "Charting the metabolic landscape of the facultative methylotroph Bacillus methanolicus".
Creator: Baudoin Delépine
Contributor: Baudoin Delépine
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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA
Number of transcripts from de novo assemblies contributing to cultivar Désirée, transcriptome and number of complete BUSCOs found in assemblies.
Proportion of all contigs in de novo assembly (blue bars) and proportion of EvidentialGene okay set (green bars), and the number of complete BUSCOs (dots) using https://busco.ezlab.org/datasets/embryophyta_odb9.tar.gz set are shown.
Assembly software abbreviations: CLCdn - CLC Genomics Workbench, Vdn - Velvet.
Creator: Maja Zagorscak
Contributor: Maja Zagorscak
Number of transcripts from de novo assemblies contributing to breeding clone PW363, transcriptome and number of complete BUSCOs found in assemblies.
Proportion of all contigs in de novo assembly (blue bars) and proportion of EvidentialGene okay set (green bars), and the number of complete BUSCOs (dots) using https://busco.ezlab.org/datasets/embryophyta_odb9.tar.gz set are shown. Assembly software abbreviations: CLCdn - CLC Genomics Workbench, Vdn - Velvet, Sdn - SPAdes.
Number of transcripts from de novo assemblies contributing to cultivar Rywal, transcriptome and number of complete BUSCOs found in assemblies.
Proportion of all contigs in de novo assembly (blue bars) and proportion of EvidentialGene okay set (green bars), and the number of complete BUSCOs (dots) using https://busco.ezlab.org/datasets/embryophyta_odb9.tar.gz set are shown. Assembly software abbreviations: CLCdn - CLC Genomics Workbench, Vdn - Velvet, Sdn - SPAdes, PBdn - PacBio.
Supplementary Table S3
Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.
Supplementary Table S4
PW363 biological evidence filtering results. Output of 1st filtering step by biological evidence for breeding clone PW363.
Supplementary Table S5
Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.
Supplementary HTML 1
Multiple sequence alignments using MAFFT v7.271 and MView v1.65.
Paralogue cluster on representative and alternative sequences, at least one from each of the four genotypes. Clusters containing 8-16 sequences.
