Models

266 Models visible to you, out of a total of 477

BPG stability notebook

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creator: Alexey Kolodkin

Contributor: Alexey Kolodkin

PGK model for S. solfataricus

Creator: Jacky Snoep

Contributor: Jacky Snoep

A small model representing the core carbon network in each cell. For more detail on the model creation see [1]. The model is written in SBML using the RAM extension for use in deFBA. Compatible python software for simulation can be found at https://tinyurl.com/yy8xu4v7

[1] S. Waldherr, D. A. OyarzĂșn, A. Bockmayr. Dynamic optimization of metabolic networks coupled with gene expression. In: Journal of Theoretical Biology, 365(0): 469 - 485.

Creators: Henning Lindhorst, Steffen Waldherr

Contributor: Henning Lindhorst

This model was created to showcase all functions of the SBML extension RAM. The model can be unr in deFBA with the python software deFBA-Python. The software is freely available at at https://tinyurl.com/yy8xu4v7

Creator: Henning Lindhorst

Contributor: Henning Lindhorst

A minimal model showing the core of resource allocation models as it can either be invested in enzymatic machinery or single biomass components with the best yield. The model is written in SBML using the RAM extension for use in deFBA. Compatible python software for simulation can be found at https://tinyurl.com/yy8xu4v7

Creator: Henning Lindhorst

Contributor: Henning Lindhorst

This SBML file uses the RAM extension and contains a minimal genome scaled model for Saccharomyces cerevisiae. The model is based of Yeast 6.06 and was published first in A.-M. Reimers Thesis "Understanding metabolic regulation and cellular resource allocation through optimization".

Creators: Henning Lindhorst, Alexandra-M. Reimers

Contributor: Henning Lindhorst

Originally submitted model file for PLaSMo accession ID PLM_71, version 2

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_9, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_9, version 2

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_9, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_9, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_10, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_10, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_8, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_8, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_50, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_50, version 2

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_50, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_50, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_30, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_70, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_70, version 2

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_70, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_70, version 1

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_64, version 4 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_64, version 4

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_64, version 3 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Originally submitted model file for PLaSMo accession ID PLM_64, version 3

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

Simplified model file for PLaSMo accession ID PLM_64, version 2 (use simplified if your software cannot read the file, e.g. Sloppy Cell)

Creators: BioData SynthSys, Andrew Millar, Andrew Millar

Contributor: BioData SynthSys

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