Models

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371 Models visible to you, out of a total of 607

NLRP3 inflammasome activation

Creators: Julia Somers, Gökçe Yağmur Summak, Ebru Kocakaya

Submitter: Marek Ostaszewski

Thrombotic complications and coagulopathy in COVID-19

Creators: Goar Frischmann, Gisela Fobo, Corinna Montrone

Submitter: Marek Ostaszewski

Kynurenine synthesis pathway

Creators: Julia Somers, Gökçe Yağmur Summak, Ebru Kocakaya

Submitter: Marek Ostaszewski

TGF beta signalling

Creator: Francesco Messina

Submitter: Marek Ostaszewski

The role of the interaction between the SARS-CoV-2 Spike protein and the renin-angiotensin pathway, in particular human ACE2 in pulmonary blood pressure regulation

Creators: Enrico Glaab, Andreas Ruepp, Corinna Montrone, Gisela Fobo

Submitter: Marek Ostaszewski

The Interferon-lambda (IFNL) map describes the action of the drug candidate IFNL on intra- and intercellular signal transduction under SARS-CoV-2.

Creators: Marius Rameil, Vanessa Nakonecnij, Marta Conti

Submitter: Marek Ostaszewski

The relation of the interferon 2 pathway and SARS-CoV-2.

Creators: Anna Niarakis, Vidisha Singh, Sara Sadat AGHAMIRI

Submitter: Marek Ostaszewski

The pathway of heme metabolism under COVID-19, involving Orf3a and Orf9c

Creators: Julia Somers, Emek Demir

Submitter: Marek Ostaszewski

The impact of SARS-CoV-2 on the apoptosis pathway

Creators: Anna Niarakis, Vidisha Singh, Sara Sadat AGHAMIRI

Submitter: Marek Ostaszewski

Here, we describe the index file generation of the mm10 genome, the genome alignment with kallisto, and quantification with bustools to obtain the used spliced / unspliced transcript input.

Creator: Markus Wolfien

Submitter: Markus Wolfien

Here is the detailed R script to generate the input needed by scSynO for synthetic cell generation and classification model training.

The code that can be embedded into any other Seurat data processing workflow is:

cellexpressiontarget_cluster

Creator: Markus Wolfien

Submitter: Markus Wolfien

Single nuclei transcriptomics data as .csv files from the Allen Brain atlas data set of mus musculus (https://celltypes.brain-map.org/) have been utilized as an input for scSynO. The underlying analysis is part of the manuscript entitled "Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling". Data anaylsis and visalizations were mainly generated with the Seurat R package (https://satijalab.org/seurat/archive/v3.2/spatial_vignette.html)

Creator: Markus Wolfien

Submitter: Markus Wolfien

No description specified

Creator: Vincent Wagner

Submitter: Vincent Wagner

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

No description specified

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2019.3 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2020.2 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2019.1 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2019.3 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2019.2 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

U2019.1 that simulates light condition with ISSF

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

Model derived from P2011.1.2 in which the steady state assumptions for the Evening complex in P2011 were eliminated. After eliminating these assumptions the model was fitted to the original dynamics of P2011.1.2 for the networks WT, lhycca1, prr79, toc1, gi, ztl. In particular for the lhycca1 double mutant only the repressive "arms" (edges) for cL were set to zero. The parameter values or cP and for COP1 variables were fixed as these have been fitted before in Pokhilko et al 2012 Mol Sys Bio.

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

First version of enzyme-constrained model (ecModel) for Streptomyces albus J1074

Creator: Cheewin Kittikunapong

Submitter: Cheewin Kittikunapong

First version of enzyme-constrained model (ecModel) for Pseudomonas putida KT2440

Creator: Cheewin Kittikunapong

Submitter: Cheewin Kittikunapong

No description specified

Creator: Saptarshi Bej

Submitter: Markus Wolfien

No description specified

Creator: Saptarshi Bej

Submitter: Saptarshi Bej

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