The main objective of SynBio4Flav is to go further in the standardization of high complexity synthetic biological parts, and to demonstrate the development of a standardized, and systematic platform for flavonoids production based on synthetic microbial consortia (SMCs).
Programme: Systems Biology Programme
SEEK ID: https://fairdomhub.org/projects/109
Public web page: Not specified
Organisms: Escherichia coli, Saccharomyces cerevisiae, Pseudomonas putida, Streptomyces albus
FAIRDOM PALs: No PALs for this Project
Project created: 18th Jun 2018
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Projects: SynBio4Flav
Institutions: Consejo Superior de Investigaciones Científicas
Projects: PSYSMO, EmPowerPutida, SynBio4Flav
Institutions: CSIC Madrid, CSIC
Projects: SynBio4Flav
Institutions: Symrise
Projects: SynBio4Flav
Institutions: German Institute of Human Nutrition
https://orcid.org/0000-0002-9977-5994Expertise: Microbiology, Microbial Genomics, Biochemistry
Projects: SilicoTryp, SYSTERACT, SynBio4Flav
Institutions: University of Glasgow, Chalmers University of Technology
https://orcid.org/0000-0002-3593-5792Projects: SynBio4Flav
Institutions: Chalmers University of Technology
Projects: PSYSMO, SynBio4Flav
Institutions: CSIC Madrid, CSIC
Projects: SynBio4Flav
Web page: http://www.cnb.csic.es/index.php/en/research/research-departments/systems-biology
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First version of Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways. This model includes as a chassis , the Pseudomonas Putida GEM (iJN1411) . It includes the metabolic reconstruction of more than 500 flavonoids and more than 500 reactions related to the flavonoid biosynthesis.
Creators: David San León Granado, Juan Nogales, Álvaro Gargantilla Becerra
Submitter: David San León Granado
Model type: Metabolic network
Model format: SBML
Environment: Matlab
Organism: Pseudomonas putida
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
First version of enzyme-constrained model (ecModel) for Streptomyces albus J1074
Creator: Cheewin Kittikunapong
Submitter: Cheewin Kittikunapong
Model type: Stoichiometric model
Model format: SBML
Environment: Matlab
Organism: Streptomyces albus
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
First version of enzyme-constrained model (ecModel) for Pseudomonas putida KT2440
Creator: Cheewin Kittikunapong
Submitter: Cheewin Kittikunapong
Model type: Stoichiometric model
Model format: SBML
Environment: Matlab
Organism: Pseudomonas putida
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
First version of enzyme-constrained model (ecModel) for Escherichia coli
Creator: Cheewin Kittikunapong
Submitter: Cheewin Kittikunapong
Model type: Stoichiometric model
Model format: SBML
Environment: Matlab
Organism: Escherichia coli
Investigations: Systems Biology and Analysis
Studies: 1 hidden item
Assays: 1 hidden item
Genome-scale metabolic model (GEM) for Streptomyces albus, maintained on https://github.com/SysBioChalmers/Salb-GEM.
Creator: Cheewin Kittikunapong
Submitter: Cheewin Kittikunapong
Model type: Metabolic network
Model format: SBML
Environment: Matlab
Organism: Streptomyces albus
Investigations: Systems Biology and Analysis
Studies: 1 hidden item
Assays: 1 hidden item
The consensus GEM for Saccharomyces cerevisiae, version 8.3.3, maintained on https://github.com/SysBioChalmers/yeast-GEM.
Creator: Eduard Kerkhoven
Submitter: Eduard Kerkhoven
Model type: Metabolic network
Model format: SBML
Environment: Matlab
Organism: Saccharomyces cerevisiae
Investigations: Systems Biology and Analysis
Studies: 1 hidden item
Assays: 1 hidden item