Projects: COVID-19 Disease Map
Institutions: Luxembourg Centre for Systems Biomedicine (LCSB)
https://orcid.org/0000-0003-3951-6680Expertise: Bioinformatics, Data Management, Data Integration
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis
Institutions: University of Nebraska-Lincoln
https://orcid.org/0000-0001-7528-3568Expertise: Computational modelling, Data analysis, Data Integration
Tools: R, Matlab, Cell designer, Cell Collective, Cytoscape
Projects: COVID-19 Disease Map, C19DM-Neo4j
Institutions: Harvard Medical School
https://orcid.org/0000-0001-5709-371XExpertise: Curation, Data Integration
Projects: Not specified
Institutions: Not specified
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes
Expertise: Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Guy's and St Thomas' NHS Foundation Trust and King's College London
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Harvard Medical School
Expertise: Modelling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Earlham Institute
Expertise: Modelling, Data Integration
Projects: COVID-19 Disease Map
Institutions: US Environmental Protection Agency
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Mediterranean Institute for Life Sciences (MedILS)
Expertise: Text Mining, Data Integration
Projects: COVID-19 Disease Map
Institutions: Harvard Medical School
Expertise: Modelling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Indraprastha Institute of Information Technology Delhi
Expertise: outreach, Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Shanghai University
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0002-1240-5553Expertise: Systems Biology, Computational Systems Biology, Databases, Dynamic modelling, Java, Mathematical modelling, Metabolic Engineering, Disease Maps, Curation, Modeling, Data Integration, Constraint-based Modelling, Parameter estimation
Tools: SBML, SBGN, SBGNML, JSBML, Jupyter, Python, cobrapy toolbox, SBSCL, InSilico, Kinetic Modeling
Andreas Dräger is the assistant professor for Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens at the University of Tübingen in Germany. His group aims to combat the spreading antibiotics resistances by using mathematical modeling and computer simulation of bacterial systems up to entire microbiomes and host-pathogen interactions. In doing so, his group actively contributes to the advancement of various COMBINE standards.
Projects: COVID-19 Disease Map
Institutions: Hospital del Mar Research Institute (IMIM)
https://orcid.org/0000-0002-9383-528XExpertise: Data Integration
Tools: DisGeNET, Data Management, Data Integration, Text Mining
Projects: COVID-19 Disease Map
Institutions: University Maastricht
https://orcid.org/0000-0002-7699-8191Expertise: Curation, Data Integration, Pathway Analysis, Network Visualization, Network biology
Tools: pathvisio, wikipathways, Cytoscape
Projects: COVID-19 Disease Map
Institutions: University of Montpellier
https://orcid.org/0000-0001-6453-5707Leader of Computational Systems Biology team at LPHI UMR 5235 CNRS and University of Montpellier
Projects: COVID-19 Disease Map
Institutions: Auckland Bioengineering Institute
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Shanghai University
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: University Maastricht
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University Maastricht
https://orcid.org/0000-0002-7770-620XExpertise: Knowledge integration, Curation, Data Integration, rare diseases, Systems Biology, GMP, GCP, Neuroscience
Tools: wikipathways, pathvisio, Cytoscape, R, Python, Statistics
Projects: COVID-19 Disease Map
Institutions: Hospital del Mar Research Institute (IMIM)
https://orcid.org/0000-0003-1244-7654Expertise: Data Integration, Text Mining, Machine Learning, Data mining
Tools: DisGeNET
Postdoctoral Researcher
Projects: COVID-19 Disease Map
Institutions: University of Rochester
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Imperial College London
Expertise: Modelling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Institut Pasteur de Tunis
Expertise: Data Integration
Projects: COVID-19 Disease Map
Institutions: University Maastricht
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Estonian Genome Centre, Institute of Genomics, University of Tartu
Expertise: Genomics, Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Newcastle
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Ontario Institute for Cancer Research
Expertise: Drug Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Western Australia
Expertise: Genomics, Curation, Data Integration
Projects: COVID-19 Disease Map, VHP project
Institutions: University Maastricht
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Luxembourg
Expertise: Data Integration
Projects: COVID-19 Disease Map
Institutions: Yenepoya University
Expertise: Biochemistry, Data analysis, Systems Biology, Data Integration
Tools: Proteomics, Systems Biology, Molecular Biology, Bioinformatics, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Florida
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Institute for Globally Distributed Open Research and Education - IGDORE
Expertise: Modeling, Data Integration
I am a Researcher at the National Laboratory of Scientific Computing (LNCC). I am a bioinformatician and my research interests are in data integration and analyses. I use scientific workflows technologies to integrate and analyse data in systems biology, phylogenomics, and functional genomics.
Post Doc (2010 – 2015) of the Department of Computer Science at the COPPE Institute of the Federal University of Rio de Janeiro (Brazil) and was supported by a FAPERJ’s grant “Post-Doc Note 10” (2013 – ...
Projects: GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"
Institutions: University Medical Center Göttingen
https://orcid.org/0000-0002-6307-3253Expertise: Data Management, Databases, Health Informatics, Data Integration
Tools: R, Docker, linux, Data Management
Researcher at the University Medical Center Göttingen, Department of Medical Informatics
Projects: iRhythmics, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation
Institutions: University of Rostock
https://orcid.org/0000-0002-1887-4772Expertise: Bioinformatics, Transcriptomics, RNA-Seq, AI, Data Integration
Postdoctoral researcher at Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg
Projects: SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology
https://orcid.org/0000-0003-4776-7164Lutz Brusch is heading the research group "Spatio-temporal pattern formation in cells and tissues" at the Centre for Information Services and High Performance Computing of TU Dresden, Germany. The group is co-developing the multi-cellular modelling and simulation framework Morpheus (https://morpheus.gitlab.io) and is collaborating with experimental labs on questions of tissue morphogenesis and regeneration.
Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, tst, tst2
Institutions: National Institute of Biology, tst
https://orcid.org/0000-0002-1669-6482Expertise: Molecular Biology, Statistics, Bioinformatics, Mathematical and statistical modeling, Programming, Data analysisMathematical modellingBioinformaticsSystems biology, Data Management, Data analysis, Visualization, Data Integration, Computational Biology
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Molecular Biology, Python, R, Systems Biology, Data Integration
Computational Biologist and Biostatistician at Department of Biotechnology and Systems Biology, National Institute of Biology (NIB)
Projects: WG Infrastructure for Translational Research, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Translational Bioinformatics, Medical Biometry, Epidemiology, Medical Informatics
Institutions: University Medical Center Göttingen, University of Tübingen, University of Saarland
https://orcid.org/0000-0002-1505-594XExpertise: Programming, Bioinformatics, Data Management, Databases, Java, Python, R, standards, Data Integration
Tools: Python, Bioinformatics, Data Management, Databases, R, Java, Data Integration
Projects: SAFE-Aqua, Biomics Projects
Institutions: Institut Pasteur
https://orcid.org/0000-0001-6286-1138Projects: FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: University of Rostock
Expertise: Data Management, Data Integration
Tools: COBRA toolbox
Expertise: Dynamic modelling, Biochemistry, Metabolomics, Programming, Data Integration, Parameter estimation
Tools: AMICI, Python, c++, Parameter estimation, PEtab
Expertise: Transcriptomics, Systems Biology, plant, Data Integration
Projects: EmPowerPutida
Institutions: LifeGlimmer GmbH
Expertise: Data Management, Databases, Bioinformatics, Python, Java, Molecular Biology, Data Integration
Tools: Data Management
Computational Biologist
Projects: EmPowerPutida
Institutions: LifeGlimmer GmbH
Expertise: Bioinformatics, Systems Biology, Transcriptomics, R, Genomics, Proteomics, Databases, Data Integration
Tools: Bioinformatics, Molecular Biology, Computational Systems Biology
Computational Biologist and App Designer @LifeGlimmer
Projects: SulfoSys - Biotec
Institutions: University Bielefeld
Expertise: Bioinformatics, Data Management, Transcriptomics, Proteomics, Metabolomics, Databases, Data Integration
Tools: Bioinformatics, Data Management, Databases, R, Java
Projects: HUMET Startup, COVID-19 Disease Map
Institutions: Centro de Investigación Príncipe Felipe, Fundación Progreso y Salud
https://orcid.org/0000-0003-3318-120XExpertise: Bioinformatics, Data Management, Mathematical modelling, Genomics, Genetics, Transcriptomics, Systems Biology, Microarray analysis, Data Integration
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Genetics, Genomics, R, Systems Biology, Transcriptomics, Java
My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of high-throughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanism-based ...
Associate Professor for Systems Biomedicine, Luxembourg Centre for Systems Biomedicine, University of Luxembourg
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: University of Goettingen
Expertise: Systems Biology, High-throughput data analysis, Data Integration
Projects: SilicoTryp, SYSTERACT, SynBio4Flav
Institutions: University of Glasgow, Chalmers University of Technology
https://orcid.org/0000-0002-3593-5792Projects: de.NBI-SysBio, GenoSysFat, Kinetics on the move - Workshop 2016, Example use cases, COMBINE Multicellular Modelling, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: University of Rostock, University of Greifswald, University Medicine of Greifswald
https://orcid.org/0000-0002-5886-5563I am a computer scientist by training with a specialisation on database and information systems. Since December 2018 I am professor of Medical Informatics at the University Medicine in Greifswald, Germany, at the Institute of Community Medicine. My lab focuses on research data management in biomedicine, data integration across health care providers, and provenance of clinical research data items within clinical information systems. Furthermore, I am actively involved in COMBINE standardisation ...
Projects: FAIRDOM, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, MS_DILI, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM Community Workers, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, ModeleXchange initiative, SDBV/HITS
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
https://orcid.org/0000-0002-8683-7084Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team. Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and ...
Projects: STREAM
Institutions: University of Warwick
Systems Biologist specialising in data integration, high-throughput sequence analysis, and evolutionary and comparative analyses.
Projects: COSMIC
Institutions: Beuth University of Applied Sciences Berlin
https://orcid.org/0000-0001-6096-1354Expertise: Mathematical modelling, Data Management, coupling metabolome and environome, rapid sampling experiments, dynamics of biological networks, bioreactor models, Optimal experimental design, Dynamic optimization., Nonlinear Dynamics, Data Integration, Parameter estimation
Tools: SBML, Matlab, Fermentation, Material balance based modeling, stimulus response experiments, evaluation of process dynamics, continuous cultivation, Dynamic modelling
Process engineer, modeling biological systems since 1985.