University of Greifswald

I'm Post-Doc in the lab of Prof. Becher at the University of Greifswald. I'm working on the relative and absolute protein quantitation using gel-based and mass-spectrometric methods.

Ulrike Mäder

Projects: BaCell-SysMO

Institutions: University of Greifswald

Hanna Meyer

Projects: BaCell-SysMO

Institutions: University of Greifswald

Expertise: Molecular Biology, Metabolomics, Metabolic Engineering

Tools: Microbiology, Molecular Biology, GC and LC analysis of metabolites | Analysis of signal molecules | Handling of anaerobic bacteria |, GC and LC analysis of metabolites, HPLC, NMR

Priyanka Nannapaneni

Projects: BaCell-SysMO

Institutions: University of Greifswald

Expertise: Bioinformatics, Bacillus subtilis

Tools: Microarray analysis

I am pursuing my PhD at Prof. Volker's Lab in the Department of Functional Genomics, EMA Universitat Greifswald, Germany. I am working on the general stress responses mediated by SigB and the prediction of SigB regulon members using the Random forest algorithm.

Praveen kumar Sappa

Projects: BaCell-SysMO

Institutions: University of Greifswald

Expertise: Microbiology, Molecular Biology, Proteomics, Bacillus subtilis, bacterial physiology

Tools: Transcriptomics, Proteomics, Microarray analysis, Enzyme assay, Mass spectrometry (LC-MS/MS), Molecular biology techniques (RNA/DNA/Protein), Cell culture, analysis of functional genomics data

I am PhD student at Prof.Uwe Voelker lab in Department of Functional Genomics. My area of research is microbial functional genomics in particular analysing the whole transcriptome(by microarray and other molecular biolology methods) of B.subtilis under various stress conditions. I use QconCAT strategy for absolute quantification of carbon metabolic enzymes via MRM(multiple reaction monitoring) by LC-MS/MS. I also perofrm experiments for understanding of dynamics of SigmaB network for modelling.

Frank Schmidt

Projects: SCaRAB

Institutions: University of Greifswald

Leif Steil

Projects: BaCell-SysMO

Institutions: University of Greifswald

Expertise: Microbiology, Biochemistry, Genetics, Molecular Biology, Bioinformatics, Transcriptomics, Proteomics, Bacillus subtilis

Tools: Genetic modification, Transcriptomics, Proteomics, Microarray analysis

I started to work with B. subtilis during my diploma thesis in Marburg, analyzing the gene expression pattern during sporulation and their control by the four sporulation sigma factors. This work was continued during my PhD thesis in Greifswald. In collaboration with Prof. Bremer and Prof. Marahiel in Marburg we also studied additional adaptation processes of B. subtilis, like the adaptation to low temperatur and high osmolarity. I am now working as a staff scientist in Prof. Völkers lab in ...

Uwe Voelker

Projects: SCaRAB, BaCell-SysMO

Institutions: University of Greifswald

Expertise: Molecular microbiology, bacterial physiology, stress adaptation of Gram-positiv bacteria, application of functional genomics technologies in microbiology

Tools: Transcriptomics, molecular biology techniques, microbiology techniques, gel-based and gel-free proteomics, analysis of functional genomics data

By training I am a molecular microbiologist with a particular interest in bacterial stress adaptation reactions. Since the early 90ies we have used functional genomics technologies, particularly proteomics, to investigate the response of Bacillus subtilis to environmental challenges. I am currently Head of the Functional Genomics Department of the Interfaculty Institute of Genetics and Functional Genomics at the Ernst-Moritz-Arndt-University Greifswald. Within the Department we are applying ...

Dagmar Waltemath

I am a computer scientist by training with a specialisation on database and information systems. Since December 2018 I am professor of Medical Informatics at the University Medicine in Greifswald, Germany, at the Institute of Community Medicine. My lab focuses on research data management in biomedicine, data integration across health care providers, and provenance of clinical research data items within clinical information systems. Furthermore, I am actively involved in COMBINE standardisation ...

Dagmar Waltemath

Projects: FAIRDOM Community Workers

Institutions: University of Greifswald

Benjamin Winter

Projects: INCOME

Institutions: University of Greifswald

https://orcid.org/0000-0003-1632-4328

Carolin Zitzmann

Projects: SysVirDrug

Institutions: University of Greifswald

Advanced Programmes list for this Institution with search and filtering

ERASysAPP

The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...

Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders

Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp

German Association for Medical Informatics, Biometry and Epidemiology (GMDS)

The GMDS (Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie) is the German Association for Medical Informatics, Biometry and Epidemiology and is the only scientific organization in this field in Germany. It is the official national member society within the EFMI and IMIA and closely cooperates with related scientific societies.

Projects: GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"

Web page: https://gmds.de

e:med

No description specified

Projects: WG Infrastructure for Translational Research, INCOME, Translational Bioinformatics, Medical Biometry, Epidemiology, Medical Informatics

Web page: Not specified

FAIRDOM

FAIRDOM is establishing a support and service network for European Systems Biology. FAIRDOM is a joint action of ERA-Net ERASysAPP and European Research Infrastructure ISBE to establish a data and model management service facility for Systems Biology. Our prime mission is to support researchers, students, trainers, funders and publishers by enabling Systems Biology projects to make their Data, Operating procedures and Models, Findable, Accessible, Interoperable and Reusable (FAIR).

Projects: FAIRDOM, FAIRDOM user meeting, FAIRDOM Community Workers

Web page: http://fair-dom.org

SysMO

SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".

The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.

Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...

Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep

Web page: http://sysmo.net/

Advanced Projects list for this Institution with search and filtering

FAIRDOM Community Workers

Collection of training material for SEEK/FAIRDOMHub

Programme: FAIRDOM

Public web page: Not specified

Organisms: Not specified

INCOME

The project "INtegrative COllaborative modeling in systems MEdicine" aims at connecting different heterogenous datasets and individual models within systems medicine.

Programme: e:med

Public web page: Not specified

Organisms: Homo sapiens

GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"

The GMDS project group bundles activities for health-related FAIR data infrastructures in the fields of biomedical research, clinical data management and medical informatics in Germany. It aims at providing a platform for information exchange about best practice for and implementation of FAIR data management in these fields and constructing a network of FAIR data managements providers in these fields. Through bridging between providers and potential users of such data management platforms within ...

Programme: German Association for Medical Informatics, Biometry and Epidemiology (GMDS)

Public web page: https://gmds.de/aktivitaeten/medizinische-informatik/projektgruppenseiten/faire-dateninfrastrukturen-fuer-die-biomedizinische-informatik/

Start date: 28th Feb 2019

End date: 27th Feb 2022

Organisms: Not specified

SysVirDrug

Translating Systems Virology data into broad-spectrum antiviral Drugs

Programme: ERASysAPP

Public web page: Not specified

Organisms: Homo sapiens, Hepatitis C virus, Dengue virus, SARS Coronavirus, Chikungunya virus, Coxsackievirus

BaCell-SysMO

BaCell-SysMO 2 Modelling carbon core metabolism in Bacillus subtilis – Exploring the contribution of protein complexes in core carbon and nitrogen metabolism.

Bacillus subtilis is a prime model organism for systems biology approaches because it is one of the most advanced models for functional genomics. Furthermore, comprehensive information on cell and molecular biology, physiology and genetics is available and the European Bacillus community (BACELL) has a well-established reputation for applying ...

Programme: SysMO

Public web page: http://www.sysmo.net/index.php?index=53

Organisms: Bacillus subtilis

SCaRAB

Systems Biology of a genetically engineered Pseudomonas fluorescens with inducible exo-polysaccharide production: analysis of the dynamics and robustness of metabolic networks

Programme: SysMO

Public web page: http://www.sysmo-alginate.net/

Organisms: Pseudomonas fluorescens