There is an urgent need for novel antibiotics to fight life-threatening infections and to counteract the increasing problem of propagating antibiotic resistance. Recently, new molecular genetic and biochemical tools have provided insight into the enormous unexploited genetic pool of environmental microbial biodiversity for new antibiotic compounds. New tools for more efficiently lifting this hidden treasure are needed to strengthen competitiveness of European industry, as well as for a cost-saving medical service for European citizens. The SYSTERACT project aims to develop the model Actinobacterium Streptomyces coelicolor into a 'Superhost' for the efficient production of antibiotic compounds, enabling a faster discovery of new antibiotics from environmental microbial resources. Central to this approach will be an iterative Systems Biology cycle, combining microbiology, genetics, biochemistry, and fermentation technology with predictive modelling. SYSTERACT brings together six partners from four ERASysApp member countries, including four universities, one non-profit research organization, as well as the latter's Technology Transfer Unit. Strong relevant industry is closely connected to the project and supports the research partners in their efforts to develop a reliable new tool by a Systems Biology approach that is useful for a more efficient discovery of new future antibiotics.
Programme: ERASysAPP
SEEK ID: https://fairdomhub.org/projects/29
Public web page: https://www.erasysapp.eu/calls/2nd-call/systeract
Organisms: Streptomyces coelicolor
FAIRDOM PALs: Ali Salehzadeh-Yazdi, Sven Even Borgos
Project created: 28th Sep 2015
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- People (22)
- Programmes (1)
- Institutions (5)
- Investigations (1+4)
- Studies (2+17)
- Assays (5+30)
- Data files (0+110)
- Models (0+3)
- Publications (3)
- Presentations (0+54)
- Events (0+21)
Projects: SYSTERACT
Institutions: University of Tübingen
Expertise: Microbiology, Molecular Biology, Genetics, Transcriptomics, Metabolic Engineering, nitrogen metabolism, Streptomyces coelicolor, Actinobacteria, antibiotic production
Tools: Fermentation, Genetic modification, Molecular biology techniques (RNA/DNA/Protein), Proteomics, Transcriptomics, Biochemistry and protein analysis
Projects: SCaRAB, STREAM, SYSTERACT, INBioPharm
Institutions: SINTEF, Norwegian University of Science and Technology
Expertise: Bioinformatics, Microarray analysis, Data analysis, Pseudomonas, Streptomyces, Stoichiometric modelling, Prokaryotic genetics, Analytical chemistry
Tools: Transcriptomics, Perl, Fermentation, GC and LC analysis of metabolites, Pathway Tools, MS imaging, Mass spectrometry (LC-MS/MS), Mass spectrometry, FT-ICR-MS, Field Flow Fractionation
Senior Research Scientist at SINTEF, Dept. of Biotechnology and Nanomedicine, Research Group Mass Spectrometry
Projects: STREAM, SCaRAB, INBioPharm, SYSTERACT
Institutions: SINTEF
Projects: MetApp, INBioPharm, SYSTERACT, Auromega
Institutions: SINTEF
https://orcid.org/0000-0002-1221-8598Research scientist
Projects: SYSTERACT
Institutions: University of Tübingen
Expertise: Genetics, Microbiology, Metabolic Engineering
Tools: antiSMASH, CloneManager, artemis
Projects: SilicoTryp, SYSTERACT, SynBio4Flav
Institutions: University of Glasgow, Chalmers University of Technology
https://orcid.org/0000-0002-3593-5792Projects: SYSTERACT, INBioPharm, OXYMOD, AquaHealth (ERA-BlueBio)
Institutions: SINTEF
Institutions: University of Tuebingen, University of Tübingen
Projects: SYSTERACT, INBioPharm
Institutions: SINTEF
Projects: SYSTERACT
Institutions: University of Tübingen
Projects: INBioPharm, SYSTERACT, BESTER, OXYMOD
Institutions: SINTEF
Projects: FAIRDOM user meeting, SYSTERACT, INBioPharm, OXYMOD, BioZEment 2.0
Institutions: University of Leiden, SINTEF
https://orcid.org/0000-0002-6793-7469Projects: SYSTERACT
Institutions: Chalmers University of Technology
https://orcid.org/0000-0001-7475-0136Projects: STREAM, SYSTERACT, INBioPharm, BioZEment 2.0, OXYMOD, BESTER, AquaHealth (ERA-BlueBio)
Institutions: SINTEF
https://orcid.org/0000-0002-9420-1959Projects: SYSTERACT
Institutions: University of Leiden
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
All creators
Antibiotics are made during the second phase of growth when there is a transition in metabolism from primary to secondary metabolism. Primary metabolism is growth related and involves all the normal cellular activities associated with cell growth and division. Whereas secondary metabolism is non-growth linked and is non-essential but many important activities occur during this phase which help the bacterium survive.
One of these activities is antibiotic production and is widespread in streptomycetes ...
Submitter: Jay Moore
Studies: ScoCyc metabolic pathway curation, Timeseries 1
Assays: Metabolic pathway curation, Online/offline measurements, metabolomics, proteomics, transcriptomics
Snapshots: No snapshots
Submitter: Jay Moore
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Assays: Metabolic pathway curation
Snapshots: No snapshots
All creators
Genotype: Wildtype (M145E) Medium: Phosphate-limited (F134)
Submitter: Jay Moore
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Assays: Online/offline measurements, metabolomics, proteomics, transcriptomics
Snapshots: No snapshots
Submitter: Jay Moore
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Study: Timeseries 1
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
SOPs: Cell dry weight (CDW) determination of Streptom..., Contamination test of Streptomyces coelicolor c..., Generation of cell material from Streptomyces c..., Generation of cell material from Streptomyces c..., Generation of cell material from Streptomyces c..., Preparation of inoculum for Streptomyces coelic..., Sampling from Streptomyces coelicolor culture f... and 1 hidden item
Data files: Fermentor 199 cultivation data
Snapshots: No snapshots
Submitter: Jay Moore
Assay type: Transcriptomics
Technology type: Custom Array
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Study: Timeseries 1
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
SOPs: No SOPs
Data files: Fermentor 199 transcriptomics
Snapshots: No snapshots
Submitter: Jay Moore
Assay type: Metabolite Profiling
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Study: Timeseries 1
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
SOPs: MCF derivatization, Metabolome extraction, Spore batch generation
Data files: 1 hidden item
Snapshots: No snapshots
Submitter: Jay Moore
Assay type: Proteomics
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Study: Timeseries 1
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
SOPs: No SOPs
Data files: 2 hidden items
Snapshots: No snapshots
Submitter: Jay Moore
Biological problem addressed: Metabolic Network
Investigation: Metabolism of Streptomyces coelicolor (SysMO ST...
Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)
Models: 1 hidden item
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Abstract (Expand)
Authors: Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh-Yazdi, Chao Du, Gilles P. van Wezel, Kay Nieselt, Eivind Almaas, Alexander Wentzel, Eduard J Kerkhoven
Date Published: 8th Oct 2019
Publication Type: Unpublished
DOI: 10.1101/796722
Citation: biorxiv;796722v4,[Preprint]
Abstract (Expand)
Authors: Z. Xu, Y. Wang, K. F. Chater, H. Y. Ou, H. H. Xu, Z. Deng, M. Tao
Date Published: 8th Jan 2017
Publication Type: Not specified
PubMed ID: 28062460
Citation: Appl Environ Microbiol. 2017 Mar 2;83(6). pii: e02889-16. doi: 10.1128/AEM.02889-16. Print 2017 Mar 15.
Abstract (Expand)
Authors: Juan Pablo Gomez-Escribano, Mervyn J. Bibb
Date Published: 1st Mar 2011
Publication Type: Not specified
DOI: 10.1111/j.1751-7915.2010.00219.x
Citation: Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters 4(2) : 207