IMOMESIC - Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer
One of the most challenging questions in cancer research is currently the interconnection of metabolism and signalling. An understanding of mechanisms that facilitate the physiological shift towards a proliferative metabolism in cancer cells is considered a major upcoming topic in oncology and is a key activity for future drug development. Due to the complexity of interrelations, a systems biology approach would be most suited. However, rarely a systems biology approach is taken that: (i) works at standard conditions, (ii) combines modelling and quantitative data generation on metabolism and signalling, (iii) considers primary healthy and cancerous cells, and (iv) addresses patient heterogeneity. This project covers all these aspects. It is therefore timely, highly innovative and demonstrates the potential of systems biology towards an application in oncology.
Key questions: Which isoforms of glycolytic enzymes and key signalling components are relevant in hepatocytes and hepatoma cells?
How does growth factor and inflammatory signalling affect glycolysis in hepatocytes and hepatoma cells?
Can we design strategies for combinatorial interventions of metabolism and signal transduction to inhibit proliferation of cancer cells but not affecting healthy cells?
Programme: ERASysAPP
SEEK ID: https://fairdomhub.org/projects/24
Public web page: Not specified
Organisms: Homo sapiens
FAIRDOM PALs: Markus Stepath, Joep Vanlier, Martin Böhm
Project created: 10th Nov 2014
Related items
- People (17)
- Programmes (1)
- Institutions (7)
- Investigations (1+3)
- Studies (3+5)
- Assays (3+7)
- Data files (3+13)
- SOPs (0+1)
- Publications (1)
- Presentations (0+17)
- Events (0+3)
- Sample types (0+1)
Projects: IMOMESIC, FAIRDOM user meeting, Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
Institutions: German Cancer Research Center (DKFZ)
https://orcid.org/0000-0002-3706-7386Expertise: Mass spectrometry (LC-MS/MS), Proteomics, Systems Biology
Projects: IMOMESIC
Institutions: Charité University Medicine Berlin
Projects: IMOMESIC
Institutions: Griffin Discoveries BV
Projects: SilicoTryp, IMOMESIC
Institutions: University of Groningen, VU University Amsterdam
Projects: IMOMESIC
Institutions: Charité University Medicine Berlin
Projects: SCaRAB, SysMilk, IMOMESIC
Institutions: Chalmers University of Technology
Projects: IMOMESIC
Institutions: Chalmers University of Technology
Projects: IMOMESIC
Institutions: Universitätsklinikum Leipzig
Projects: IMOMESIC
Institutions: Charité University Medicine Berlin
Projects: IMOMESIC
Institutions: German Cancer Research Center (DKFZ)
Projects: SysMO-LAB, SysMilk, IMOMESIC
Institutions: Wageningen University & Research, VU University Amsterdam
https://orcid.org/0000-0003-3929-0423Expertise: Metabolic Pathway Analysis and Engineering Microbial Physiology Modeling of Biological Networks Industrial Systems Biotechnology White Biotech..., genome-scale modeling, enzyme kinetics, Dynamics and Control of Biological Networks
Tools: Metabolomics, enzymatic analyses, Chemostat culture, Kinetic Modeling
Since August 2008 I am professor in Systems Biology at the VU University Amsterdam. My Systems Bioinformatics group focusses on systems biology with a special focus on integrative bioinformatics. It aims at forming bridges between the classical bottom-up approaches in systems biology and the more data-driven approaches in classical bioinformatics. We combine experimental, modeling and theoretical approaches to study cellular physiology, with an emphasis on metabolic networks.
Projects: IMOMESIC
Institutions: German Cancer Research Center (DKFZ)
Institutions: University of Freiburg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Submitter: Jurgen Haanstra
Studies: Inhibition with Sulfasalazine (SSZ), Measurements of metabolism of HepG2 cells at 0 mM, 6 mM or 22 mM externa..., protein per cell for HepG2 cells
Assays: Cell counts and BCA Protein, Cell counts and metabolite levels, Inhibition experiment for the effect of SSZ on HepG2 metabolism
Snapshots: Snapshot 1, Snapshot 2
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Assays: Cell counts and BCA Protein
Snapshots: No snapshots
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Snapshots: No snapshots
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Assays: Inhibition experiment for the effect of SSZ on HepG2 metabolism
Snapshots: No snapshots
Submitter: Jurgen Haanstra
Assay type: Cell Count
Technology type: Technology Type
Investigation: Metabolism of HepG2 liver cancer cells
Organisms: No organisms
SOPs: No SOPs
Data files: HepG2 | cell counts and metabolite levels over ...
Snapshots: No snapshots
Submitter: Jurgen Haanstra
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Metabolism of HepG2 liver cancer cells
Organisms: No organisms
SOPs: No SOPs
Data files: Cell counts and metbolites for HepG2 cells with...
Snapshots: No snapshots
Submitter: Jurgen Haanstra
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Metabolism of HepG2 liver cancer cells
Organisms: No organisms
SOPs: No SOPs
Data files: HepG2_protein_cell_0mM_6mMGlc
Snapshots: No snapshots
Creator: Jurgen Haanstra
Submitter: Jurgen Haanstra
Investigations: Metabolism of HepG2 liver cancer cells
Studies: protein per cell for HepG2 cells
Assays: Cell counts and BCA Protein
Creator: Jurgen Haanstra
Submitter: Jurgen Haanstra
Investigations: Metabolism of HepG2 liver cancer cells
Creator: Jurgen Haanstra
Submitter: Jurgen Haanstra
Investigations: Metabolism of HepG2 liver cancer cells
Studies: Inhibition with Sulfasalazine (SSZ)
Abstract (Expand)
Authors: Avlant Nilsson, Jurgen R. Haanstra, Martin Engqvist, Albert Gerding, Barbara M. Bakker, Ursula Klingmüller, Bas Teusink, Jens Nielsen
Date Published: 27th Apr 2020
Publication Type: Journal
Citation: Proc Natl Acad Sci USA:201919250