Projects: Group Data Science, Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition, Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis
Institutions: Forschungszentrum Borstel
https://orcid.org/0009-0008-0344-2740Expertise: Bioinformatics, Data analysis, Proteomics, Python, R
Projects: COVID-19 Disease Map
Institutions: University of British Columbia
https://orcid.org/0000-0001-5844-2731Expertise: Proteomics, N-terminomics, TAILS, degradomics, proteases, protease substrate discovery, protease inhibitors, MALT1 paracaspase in NFkB activtaion, Interferon inactivation by proteases, viral proteases, Innate immunity
Tools: Proteomics, TAILS, PICS, ATOMS, Protease assays, MALDI-TOF/TOF, LC-MS/MS, Animal modes
Professor Christopher Overall was appointed a Tier 1 Canada Research Chair in Protease Proteomics and Systems Biology (2001) and an Honorary Professor Albert-Ludwigs Universität Freiburg, Germany (2014–) after being a Senior Fellow of the Freiburg Institute of Advanced Studies, Albert-Ludwigs Universität Freiburg, Germany (2010–2013). He was inducted as a fellow into the Royal Society of Canada, Academy of Science in 2018. He is best known for his development of proteomic methodology for the ...
Projects: COVID-19 Disease Map
Institutions: Biomax Informatics AG
Projects: COVID-19 Disease Map
Institutions: The International Clinical Research Center of St. Anne's University Hospital Brno
https://orcid.org/0000-0002-1768-3894Expertise: Epigenetics, Liver, Cancer research, Metabolomics, Transcriptomics, Proteomics, Lipids
Principal Investigator International Clinical Research Center (FNUSA-ICRC) Brno Czech Republic
Projects: Rhodolive
Institutions: ENEA - The Agenzia nazionale per le nuove tecnologie, l'energia e lo sviluppo economico sostenibile
Expertise: Proteomics, Molecular Biology, Mycoremediation
Expertise: Protein and Enzyme structure and mechanism, Thermophilic proteins in industrial biocatalysis, Biochemistry, Bioinformatics, Microbiology, Molecular Biology, Proteomics
Tools: Biochemistry, Biochemistry and protein analysis, Bioinformatics, Microbiology, Molecular biology techniques (RNA/DNA/Protein), Proteomics
Prof. Dr. Kathrin Thedieck MESI-STRAT Coordinator Leader WP8 – Project Coordination
Projects: EmPowerPutida
Institutions: LifeGlimmer GmbH
Expertise: Bioinformatics, Systems Biology, Transcriptomics, R, Genomics, Proteomics, Databases, Data Integration
Tools: Bioinformatics, Molecular Biology, Computational Systems Biology
Computational Biologist and App Designer @LifeGlimmer
Expertise: Bioinformatics, Molecular Biology, Next Generation Sequencing, metagenomics, Proteomics, Programming
Tools: bash, Perl, R, Genomics, Proteomics, Biochemistry and protein analysis
Research scientist in multi-Omics, molecular (cell)biology and bioinformatics.
Projects: IMOMESIC, FAIRDOM user meeting, Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
Institutions: German Cancer Research Center (DKFZ)
https://orcid.org/0000-0002-3706-7386Expertise: Mass spectrometry (LC-MS/MS), Proteomics, Systems Biology
Team leader "Quantitative Microbial Phenotyping" Institute of Bio- and Geosciences, IBG-1: Biotechnology Forschungszentrum Jülich GmbH 52425 Jülich, Germany
Projects: SulfoSys - Biotec
Institutions: University Bielefeld
Expertise: Bioinformatics, Data Management, Transcriptomics, Proteomics, Metabolomics, Databases, Data Integration
Tools: Bioinformatics, Data Management, Databases, R, Java
Projects: LEANPROT
Institutions: Competence Center of Food and Fermentation Technologies
Expertise: Proteomics, Fermentation, Escherichia coli
Tools: continuous cultivation, Maxquant, SILAC, Proteomics
Projects: MOSES, ExtremoPharm, ZucAt, GenoSysFat, DigiSal, EraCoBiotech 2 nd call proposal preparation, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: University of Stuttgart, University of Hohenheim, Norwegian University of Life Sciences, Norwegian University of Science and Technology
https://orcid.org/0000-0002-7973-9902Expertise: Biochemistry, coupling metabolome and environome, rapid sampling experiments, Systems Biology, carbon metabolism, Stoichiometric modelling, Proteomics, Metabolomics, yeast, fungi, Dynamics and Control of Biological Networks
Tools: Biochemistry and protein analysis, Metabolomics, Matlab, Fermentation, Chromatography, Material balance based modeling, stimulus response experiments, continuous cultivation, Enzyme assay, Mass spectrometry (LC-MS/MS), HPLC, GC and LC/MS analysis of metabolites, ODE, Parameter estimation
I've become a SysMO DB PAL for MOSES project in 2007 being a post-doc in lab of Prof. Matthias Reuss at University of Stuttgart. In the MOSES project, our major efforts were in the experimental data acquisition for dynamic model of primary carbon and anaerobic energy metabolism in yeast. The model implements prediction of perturbations of two types: glucose pulse and temperature jump. We implement “stimulus-response” methodology for the unraveling the dynamic structure of the network and to ...
Projects: SysMetEx
Institutions: Universitity Duisburg-Essen
My research is intended to contribute to the elucidation of the physiological and molecular processes involved in the biofilm formation of acidophilic leaching bacteria with emphasis in their cell-cell communication mechanisms. In SysMetEx, our role is to understand biofilm formation at a microscopical and OMICS levels, in order to optimize it.
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Max-Planck Institute for Molecular Genetics
Expertise: Cell biology, Molecular Biology, Transcriptomics, Proteomics
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Imperial College London
I am a first year PhD student at Imperial College London. My undergraduate degree was in Chemistry with a focus in medicinal Chemistry. My PhD project focuses on using chemical proteomics to obtain time resolved data of hypothesized signalling networks in cancer. More specifically, I study the roles of the KLK Activome in prostate cancer progression. My future research goals include developing a deterministic kinetic model of the KLK Activome that will aid in the discovery of novel therapeutics ...
Projects: FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, FAIRDOM user meeting
Institutions: University of Zürich, ETH Zurich, Manchester Centre for Integrative Systems Biology, University of Manchester
Expertise: Bioinformatics, Proteomics, Genomics
Tools: Matlab, Microarray analysis, Data Management, Computational Systems Biology, Perl, Python
I hold a Medical Doctor Diploma (Lviv, Ukraine) with the specialization in General Medicine. After the graduation from the Post Graduate Program in Bioinformatics at the Seneca College/York University (Toronto, Canada), I successfully participated in the number of scientific projects conducted at the University of Toronto (Canada) and the Toronto East General Hospital (Canada).
I obtained the PhD in Bioinformatics at the Swiss Institute of Bioinformatics (Geneva, Switzerland). As a PhD student, ...
Projects: SilicoTryp
Institutions: University of Edinburgh
I am a Postdoc at Keith Matthews lab in the Institute of Immunology and Infection Research, Edinburgh University. As part of the SilicoTryp project we are in charge of performing Targeted disruption and Overexpression of critical enzymes of Trypanosoma brucei redox metabolism enzymes and developmental perturbations to provide part of the necessary data for the construction of the model. Also generate consistent samples, so that data can be integrated and quantification results are guarateed to ...
Projects: KOSMOBAC
Institutions: University of Groningen
Expertise: Biochemistry, Proteomics, membrane biology, protein-lipid interactions, physicochemical properties of membranes, functional protein expression
Tools: The Membrane Enzymology group focuses on the molecular mechanisms of transport and signalling across biological membranes. In other words: How do m..., engineering principles and approaches from molecular biology and synthetic chemistry are applied. Confocal microscopy and various spectroscopic met...
Bert Poolman is professor in biochemistry and program director of the Centre for Synthetic Biology. His research focuses on the elucidation of the mechanisms by which signals are transduced and small molecules are translocated across cellular membranes. Cells are reengineered for the production of correctly folded membrane proteins, and methods are developed to reconstitute complex molecular assemblies in synthetic membranes and to analyze their functional and structural properties. The in vitro ...
Projects: BaCell-SysMO
Institutions: University of Greifswald
I started to work with B. subtilis during my diploma thesis in Marburg, analyzing the gene expression pattern during sporulation and their control by the four sporulation sigma factors. This work was continued during my PhD thesis in Greifswald. In collaboration with Prof. Bremer and Prof. Marahiel in Marburg we also studied additional adaptation processes of B. subtilis, like the adaptation to low temperatur and high osmolarity. I am now working as a staff scientist in Prof. Völkers lab in ...
Projects: SulfoSys, SulfoSys - Biotec
Institutions: University of Sheffield
I am the foundation Professor of Systems Biology and Engineering within the Department of Chemical and Process Engineering (CPE), at The University of Sheffield. My research philosophy is centred on a mechanistic systems biology approach to solve biochemical reaction engineered processes. I wish to pursue issues involved in the effective utilisation of biological resources. The approach is specifically targeted at the conjunction of chemical engineering (metabolic engineering and synthetic biology), ...
Projects: SulfoSys, SulfoSys - Biotec
Institutions: University of Sheffield
Projects: SysMO-LAB
Institutions: Norwegian University of Life Sciences
Projects: BaCell-SysMO
Institutions: University of Greifswald
I am PhD student at Prof.Uwe Voelker lab in Department of Functional Genomics. My area of research is microbial functional genomics in particular analysing the whole transcriptome(by microarray and other molecular biolology methods) of B.subtilis under various stress conditions. I use QconCAT strategy for absolute quantification of carbon metabolic enzymes via MRM(multiple reaction monitoring) by LC-MS/MS. I also perofrm experiments for understanding of dynamics of SigmaB network for modelling.