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SysMO356 Disease Maps152 ERASysAPP140 Independent Projects129 Era CoBioTech109 FAIRDOM65 de.NBI Systems Biology Service Center (de.NBI-SysBio)61 The Digital Salmon45 e:Bio38 HUMET32 NIBSys28 dCod 1.0: decoding systems toxicology of cod26 LiSyM - Systems Medicine of the Liver22 SynthSys22 COMBINE (Computational Modeling in Biology Network)22 DLN - OXYMOD22 CoolWine17 German Association for Medical Informatics, Biometry and Epidemiology (GMDS)17 e:med13 Newcastle University Systems Modelling of Ageing13 EnzymeML13 BioZEment12 WooBAdh12 Auromega12 Model repository for M4 (Make Me My Model) clients of ISBE11 Druglogics11 SAFE-Aqua10 BioSpec9 MS_DILI8 Systems Biology Programme8 COVID-19 Tools and Studies8 SARCHI: Mechanistic modelling of health and epidemiology7 RNA Systems Biology Lab6 Modelling Light Control of Development5 Halliday Lab4 Journals3 Breast Cancer Simulation2 Synthetic Biology HHU2 DiaPhotosynth2 Mathematical modelling of the morphological transition of Pseudomonas aeruginosa1 Proteome Centre Tuebingen1 Laboratory of the /cytoplasmic/ heredity (Institute of Genetics and Cytology, NAS Belarus)1 Earth and Life Institute1 The Novo Nordisk Foundation Center for Biosustainability1 API_testing_projects1 Thesis AHG 20191 KOCH1 GPSLab testing Programme1 Interface MIAPPE / BrAPI1 Data_Management_lessons1 Ugent data stewards1 ILVO test1 MRRDEP1 Pseudomonas putida metabolism1 Biomics Platform1 3DMM2O1 More...

COVID-19 Disease Map152 PSYSMO52 FAIRDOM user meeting45 DigiSal42 BaCell-SysMO40 SysMO-LAB40 Kinetics on the move - Workshop 201640 ICYSB 2015 - International Practical Course in Systems Biology37 GenoSysFat36 TRANSLUCENT35 STREAM35 PoLiMeR - Polymers in the Liver: Metabolism and Regulation33 HUMET Startup32 EmPowerPutida32 MESI-STRAT32 COSMIC31 SUMO29 KOSMOBAC27 SulfoSys26 Systems toxicology of Atlantic cod26 BESTER26 Rhodolive26 FAIRDOM22 SYSTERACT22 COMBINE Multicellular Modelling22 OXYMOD22 SCaRAB21 SulfoSys - Biotec21 MOSES20 INDIE - Biotechnological production of sustainable indole19 TRALAMINOL18 IMOMESIC17 SBEpo - Systems Biology of Erythropoietin17 SEEK tutorial for DigiSal17 CoolWine17 GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"17 SysMetEx16 iRhythmics16 INBioPharm16 SilicoTryp15 SysVirDrug15 MetApp15 Sustainable co-production15 HOTSOLUTE14 C1Pro14 SysMO DB13 MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine13 EnzymeML13 SysMilk12 WURSynBio12 BioZEment 2.012 Auromega12 Environmentally-friendly bioadhesives from renewable resources (WooBAdh)12 XyloCut11 FAIRDOM Community Workers11 de.NBI-SysBio10 Colosys10 SAFE-Aqua10 PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops10 ROBUSTYEAST9 LEANPROT9 Example use cases9 EraCoBiotech 2 nd call proposal preparation9 FAIRDOM & LiSyM & de.NBI Data Structuring Training9 _p_stRT9 Noisy-Strep8 CropClock8 MS_DILI8 INCOME8 SynBio4Flav8 COVID-19 related studies and tools in Germany8 WineSys7 ExtremoPharm7 Chronic Liver Disease Progression (LiSyM-DP - Pillar II)7 Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)7 NTNU Health Druglogics7 SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture7 Systems modelling age-related changes in the maintenance of dermal extra-cellular matrix: mechanisms and interventions7 NAD COMPARTMENTATION7 ZucAt6 Early Metabolic Injury (LiSyM-EMI - Pillar I)6 The Hedgehog Signalling Pathway (LiSyM-JGMMS)6 Millar group6 CausalDB6 PlaSMo model repository6 Dynamic interplay between nuclei and mitochondria in ageing cells6 Lipofungi6 DeepHyperSpec6 Bio4Fuels6 Whole body modelling of glucose metabolism in malaria patients5 WG Infrastructure for Translational Research5 TiMet5 GB-XMap: Assessing the risk of gut-brain cross-diseases Investigating the gut-brain-axis5 Light and plant development5 LIGNOLIPP5 Working Group Nicole Radde5 Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)4 Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)4 Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)4 pISA-tree4 Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)4 Multiscale modelling of state transitions in the host-microbiome-brain network4 Regulation of flowering time in natural conditions4 FAIRDOM Templates4 Light control of leaf development4 Stress granules4 Simulation Foundries4 ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA)4 RootBook3 Molecular Systems Biology3 LiSyM Core Infrastructure and Management (LiSyM-PD)3 Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)3 HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato3 Computational pathway design for biotechnological applications3 ScyCode3 Bergen(Ziegler lab) project AF-NADase3 NAD phylogeny3 Outreach - Senescence RStudio-Shiny application3 Outreach - Simulation of cellular senescence using an agent based modelling approach3 CML for thermophysical properties of mixtures3 miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence3 LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients3 MIX-UP3 CEPLAS – Cluster of Excellence on Plant Sciences3 Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population3 SysMO Funders2 ErasysApp Funders2 Make Me My Model2 Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)2 Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)2 MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection2 POP - the Parameter Optimisation Problem2 Crossover Research 2.02 Extremophiles metabolsim2 Yeast glycolytic oscillations2 Are microRNAs key mediators of cartilage destruction in osteoarthritis?2 NAMPT affinity2 Outreach - Simulation of breast cancer development using an agent based modelling approach2 Outreach - Breast Cancer RStudio-Shiny application2 CF transcriptome2 UnCentre - Unlocking satellite DNA and centromere structure in vertebrate chromosomes2 Toggle switch2 Finding interaction partners of thylakoid membrane insertase2 Characterization of P. tricornutum chloroplast protein mutants2 Manchester Institute for Biotechnology1 Systo models1 Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1 Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1 Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1 Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1 Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1 Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1 Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1 Training Hunfeld1 Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa1 ROS detailed model for MSB manucript1 Steroid biosynthesis1 Proteogenomics of melanoma1 DCM1 Lobet's group1 Escherichia coli chemical product tolerance1 Fairdom Hub documents1 RStudio-Shiny and Java_API connection testing1 Thesis1 BIOMICRO PROJECT1 Agro-ecological modelling1 GPSLab testing1 Interface MIAPPE / BrAPI1 Obsolete-ToDelete-011 Unlock1 Test Project1 Mapping Disease Modules Overlaps in Biological Networks1 RDM awareness1 Perennial ryegrass1 Genetic diversity and forage yield of perennial ryegrass1 MPIEvolBio-SciComp1 MRRDEP1 Acetyl-coa production in Pseudomonas putida1 Biomics Projects1 Thrust C21 More...

Norwegian University of Life Sciences52 Norwegian University of Science and Technology48 Wageningen University & Research43 University of Bergen34 University of Groningen30 SINTEF28 University of Stuttgart28 University of Edinburgh27 University of Rostock25 Heidelberg Institute for Theoretical Studies (HITS gGmbH)23 Kinetics on the move Workshop at HITS22 Manchester Centre for Integrative Systems Biology, University of Manchester20 German Cancer Research Center (DKFZ)19 University of Heidelberg18 University of Amsterdam17 University of Greifswald17 University of Aberdeen16 Imperial College London15 University of Newcastle15 University of Braunschweig14 University of Freiburg13 ETH Zurich13 University of Leiden12 CSIC Madrid11 VU University Amsterdam11 University Duisburg-Essen11 University of Sheffield11 University of Warwick11 CSIC11 School of Computer Science, University of Manchester10 UNIBI: Bielefeld University10 University of Tübingen10 Helmholtz Centre for Infection Research Braunscheig9 Humboldt-Universität zu Berlin9 Chalmers University of Technology9 University of Luxembourg9 University of Gothenburg9 Institut Pasteur9 National Institute of Biology9 Rostock University Medical Centre9 Luxembourg Centre for Systems Biomedicine (LCSB)9 University of Bonn8 University of Goettingen8 University of Ulm8 Forschungszentrum Jülich8 Charité University Medicine Berlin8 University Maastricht8 University Medical Center Göttingen8 National Institute for Infectious Diseases "L.Spallanzani"8 Autonomous University of Barcelona7 Max Planck Institute for Dynamics of Complex Technical Systems7 University of Nottingham7 University of Vienna7 Universitat Rovira i Virgili7 Universidade de Santiago de Compostela7 University of Erlangen-Nuernberg6 Institut Curie6 Lund University6 Technische Universität Darmstadt6 RNA Systems Biology Lab - BioISI/FCUL6 University of Duesseldorf5 University of Glasgow5 European Molecular Biology Laboratory5 Heinrich Heine University of Düsseldorf5 University of Olso5 Stellenbosch University5 LifeGlimmer GmbH5 Indiana University Bloomington5 Düzen Biological Sciences R&D and Production Company5 Medical University Vienna4 University of Cordoba4 University of Dortmund4 Ludwig-Maximilians University of Munich4 University of Tuebingen4 INSA Toulouse4 Institute of Cytology and Genetics4 Novosibirsk State University4 Humboldt University Berlin4 European Institute for Systems Biology and Medicine4 Instituto de Tecnologia Química e Biológia - Universidade Nova de Lisboa4 BASF4 CRG Centre for Genomic Regulation4 National Center for Genetic Engineering and Biotechnology4 University of Exeter4 ICAHN Icahn School of Medicine at Mount Sinai4 Green Biologics Ltd4 Leuphana University of Lüneburg4 National Institute of Chemistry (Slovenia)4 ENEA - The Agenzia nazionale per le nuove tecnologie, l'energia e lo sviluppo economico sostenibile4 CSIC Barcelona - Consejo Superior de Investigaciones Científicas4 Keio University4 Barcelona Supercomputing Center4 Institute of Physiology Academy of Sciences3 ETH Zurich & Basel / The Scientific IT Services (SIS) division3 Max-Planck-Institute of Biochemistry Martinsried3 University Medical Centre Groningen3 University of Hannover3 University of Applied Sciences Koblenz, Rhein Ahr Campus3 University of Marburg3 Otto-von-Guericke University Magdeburg3 University Bielefeld3 University of Zürich3 Technische Universität Dresden3 Leiden University Medical Center3 Linnaeus University3 Università della Svizzera Italiana3 Ruhr University Bochum3 Universität Konstanz3 Universitity Duisburg-Essen3 Technische Universität Berlin (TU Berlin)3 Latvia University of Agriculture3 Ecole Polytechnique Fédérale de Lausanne (EPFL)3 Winogradsky Institute of Microbiology, Federal Research Center “Biotechnology", Russian Academy of Sciences3 FAIRDOM User meeting3 Universität Leipzig - Medizinische Fakultät - Institut für Biochemie3 University College London (UCL)3 Durham University3 ICB Helmholtz Center Munich3 PROCESSIUM3 University of Kassel3 Asociación para la Investigación, Desarrollo e Innovación del sector Agroalimentario (AIDISA)3 PROZOMIX3 Sunchem Italy3 John Innes Centre3 Earlham Institute3 Ontario Institute for Cancer Research3 University of Pittsburgh3 Harvard Medical School3 Oregon Health & Science University (OHSU)3 CSIC Vigo2 INBIOTEC Leon2 University of Essex2 University of Newcastle-upon-Tyne2 University of Stellenbosch2 Queen's University Belfast2 eGene Biotechnologie GmbH2 Beuth University of Applied Sciences Berlin2 University of Cologne2 Technical University of Munich2 TATAA BioCenter2 University of Cyprus2 Freie Universität Berlin2 Delft University of Technology (DUT)2 Competence Center of Food and Fermentation Technologies2 University of Hohenheim2 Cargill2 IDIBAPS2 KAIST2 Caltech2 geneXplain GmbH2 University Medical Center Hamburg - Eppendorf Hamburg2 Leibniz-Institut für Arbeitsforschung (IfADo)2 UW Biology - University of Washington2 Auckland Bioengineering Institute2 Max-Planck-Institut für Molekulare Pflanzenphysiologie2 Oslo and Akershus University College2 PATH - Patients' Tumor Bank of Hope2 Vall d´Hebron Institute of Oncology (VHIO)2 The Arctic University of Norway (UiT)2 SysBioSim2 University of Crete2 Université Clermont Auvergne (UCA)2 Indear2 Leibniz Institute for Farm Animal Biology (FBN)2 Axxence Aromatic GmbH2 Mimetas2 University of Copenhagen2 National Institute on Aging2 University of Leipzig - Institute for Medical Informatics, Statistics and Epidemiology (IMISE)2 Université de Lorraine2 University of Washington, Environmental and Forest Sciences2 University Of Innsbruck2 INSTITUTE FOR PLANT MOLECULAR AND CELL BIOLOGY (IBMCP)2 Consiglio Nazionale delle Ricerche2 University of Ghent2 Gladstone Institutes2 University of Évry Val d'Essonne2 Biomax Informatics AG2 Centre national de la Recherche Scientifique (CNRS)2 The European Bioinformatics Institute < EMBL-EBI2 Fundacion, Progreso y Salud2 Hospital del Mar Research Institute (IMIM)2 Institut Pasteur de Tunis2 Sanofi R&D2 Shanghai University2 CSIC Granada1 DSM Nutritional Products Ltd.1 Institut National de la Recherche Agronomique1 University of London UCL1 University of Stavanger1 Max-Planck-Institute for terrestrial Microbiology1 BBSRC1 Technical University of Denmark - Systems Biology1 Sigma Aldrich ( Swiss)1 Utrecht University1 NovaMechanics Ltd1 Technology Transfer Heidelberg GmbH1 Biobyte Solutions GmbH (BS)1 Chr-Hansen A/S (CH)1 Sinvent AS - SINTEF1 Griffin Discoveries BV1 Linköping University1 Syngenta Seeds GmbH1 Okayama University1 Buenos Aires1 University of Milano-Bicocca1 Uni Basel1 Åbo Akademi University1 Institute for Experimental Internal Medicine1 University of Tokyo1 Max-Planck Institute for Molecular Genetics1 Stockholm University1 Radboud University Nijmegen1 Institute of Pathology1 Otto-von-Guericke-Universität Magdeburg1 IFIBYNE - Physiology, Molecular Biology and Neurosciences1 biotechrabbit GmbH1 Immanuel Kant Baltic Federal University (IKBFU)1 SYSBIO - Centre of Systems Biology1 Institute of Cytology and Genetics SB RAS1 Unicamp - University of Campinas1 MDC/BIMSB1 Centre for Digital Life Norway1 IDAEA-CSIC1 Vall d'Hebron Institut de Recerca (VHIR)1 Peter MacCallum Cancer Centre1 Standigm1 Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences1 Institute of Microbiology and Biotechnology, University of Latvia1 Nazarbayev University1 Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark1 ZonMw1 UPF1 JAPAN TOBACCO INC1 IDIBELL1 CEIT1 Centro de Investigación Príncipe Felipe1 University of Ulster1 Universitair ziekenhuis Antwerpen1 University Hospital Heidelberg1 Roche Diagnostics1 Université catholique de Louvain1 Liverpool John Moores University1 AstraZeneca1 University of Lausanne1 University of Zurich1 Bilkent University1 Consejo Superior de Investigaciones Científicas1 Ingenza Ltd.1 Abengoa Research SL1 Infrastructure Systems Biology Europe1 Universitätsklinikum Leipzig1 Universitätsklinikum Dresden - Medizinische Klinik I, Bereich Gastroenterologie & Hepatologie1 RWTH Aachen University Hospital - Department of Internal Medicine III1 Bioinformatics MIlan Bicocca (BIMIB) - Università degli Studi di Milano Bicocca1 INRA Bordeaux-Aquitaine1 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI)1 Vectron Biosolutions AS1 University of Birmingham1 University Hospital Schleswig-Holstein, Kiel, General Surgery1 De Duve Institute1 Neuroimmun GmbH1 National Laboratory of Energy and Geology (LNEG)1 BIOCERES S.A.1 University Medicine of Greifswald1 University of Michigan1 Beilstein Institut1 Iceni Diagnostics Ltd1 Bodegas Roda S.A.1 Evonik Industries AG1 VTT Technical Research Centre of Finland1 University of Ljubljana1 Fraunhofer-Institut für Chemische Technologie ICT1 Acies Bio1 MIT1 Kiel University1 Symrise1 University of Connecticut1 Netherlands Cancer Institute1 University of St Andrews1 Howest University of Applied Sciences1 Max Planck Institute for Evolutionary Biology1 Technical University of Denmark1 Integrative BioInformatics Inc.1 CSIR-Institute of Genomics and Integrative Biology1 The International Clinical Research Center of St. Anne's University Hospital Brno1 Yenepoya University1 Policlinico Universitario Agostino Gemelli IRCCS1 Riga Technical University1 Fundación Progreso y Salud1 Monash University1 American University of Sharjah1 Centre de Recherche en Cancerologie de Toulouse1 Centre for Research and Technology Hellas1 esqLABS GmbH1 Estonian Genome Centre, Institute of Genomics, University of Tartu1 German Center for Neurodegenerative Diseases (DZNE)1 Guy's and St Thomas' NHS Foundation Trust and King's College London1 Hasso-Plattner Institute/ TU Berlin1 IBM Research, Zurich1 Indraprastha Institute of Information Technology Delhi1 INSERM1 Institute for Globally Distributed Open Research and Education - IGDORE1 Mediterranean Institute for Life Sciences (MedILS)1 Morpho-Biomimicry research and innovation centre1 MRC-University of Glasgow Centre for Virus Research1 Paris Brain Institute / Inria1 Systems Biology Institute (SBI)1 Università Cattolica del Sacro Cuore1 University of Lisbon1 University of Florida1 University of Lyon1 University of Montpellier1 University of Nebraska-Lincoln1 University of Rochester1 University of Rome Tor Vergata1 University of Surrey1 University of Western Australia1 US Environmental Protection Agency1 Biomathematica1 Institut de Recherche Saint Louis1 More...

Germany435 United Kingdom176 Norway170 Netherlands132 Spain85 France45 United States37 Sweden31 Switzerland30 Italy23 Luxembourg17 Slovenia15 Austria13 Russian Federation12 Portugal11 Japan8 Belgium7 Denmark6 Turkey6 Argentina5 South Africa5 Czech Republic4 India4 Latvia4 Thailand4 Australia3 Canada3 Cyprus3 Estonia3 Greece3 Korea, Republic of3 China2 Finland2 New Zealand2 Tunisia2 United Arab Emirates1 Brazil1 Croatia1 Kazakhstan1 More...

Postdoc59 PhD Student38 Project Coordinator31 Vice Coordinator8 Student8 Technician2

Molecular Biology111 Systems Biology82 Microbiology71 Bioinformatics68 Biochemistry59 Mathematical modelling55 Data integration50 curation50 Data Management39 Transcriptomics37 Genetics33 Genomics25 Proteomics25 Metabolic Engineering25 modeling25 Databases24 Metabolomics22 modelling22 dynamics and control of biological networks21 Molecular microbiology21 parameter estimation20 Cell biology17 Software Engineering16 Bacillus subtilis16 Data analysis16 Python13 Programming13 Dynamic modelling12 metabolic networks12 Biotechnology12 R11 Computational Systems Biology11 carbon metabolism11 standards11 Fermentation10 Synthetic Biology10 computational biology10 gene regulation9 network analysis9 Java8 Mathematical and statistical modeling8 functional protein expression8 protein-protein interactions8 Cell physiology8 SBML7 Microarray analysis7 Escherichia coli7 dynamics of biological networks7 stress responses7 regulation of gene expression7 Bacterial Cell Biology7 Kinetic modelling7 Image analysis7 metabolism7 Agent-based modelling6 Regulatory Networks6 Single Cell analysis5 dynamics of biological networks.5 Mathematics5 Mathematical modelling of biosystems and bioprocesses5 Signalling networks5 Stoichiometric modelling5 Streptococcus pyogenes4 Physics4 protein secretion4 membrane biology4 Comparative Genomics4 Nonlinear Dynamics4 Statistical Physics4 Mathematical modelling of biological systems4 Anaerobic Microbiology4 Clostridium4 carbon catabolite regulation in Gram positive bacteria4 Protein-DNA-interaction4 genome-scale modeling4 computational structural biology4 metagenomics4 Machine Learning4 Glycolysis4 Metabolic Models4 Immunology4 Liver4 quantative biology4 Lipids4 Cancer research4 photobiology4 plant biotechnology4 biocatalysis4 AI4 Data intgeration4 Saccharomyces cerevisiae3 Reactor models3 coupling metabolome and environome3 rapid sampling experiments3 bioreactor models3 ontology3 Deterministic modelling of gene regulation networks3 translational control of gene expression3 phenotypic heterogeneity3 bistability3 metal ion homeostasis3 Escherichia coli Membrane protein Biochemistry3 Optimal experimental design3 Dynamic optimization.3 Mathematical modeling3 Mass spectrometry (LC-MS/MS)3 Time Series Analysis3 Microbiology Biochemistry Molecular biology Genetics Enzymology Synthetic biology Regulatory metabolic networks3 Biophysics3 Escherichia coli physiology3 bacterial metabolism3 bacterial gene regulation3 microscopy3 Bacterial metabolism | Metabolic engineering3 Metabolic Pathway Analysis and Engineering Microbial Physiology Modeling of Biological Networks Industrial Systems Biotechnology White Biotechnology Strain and Process Optimization with bacteria3 Microarray experiments with prokaryotes3 genetic engineering3 enzyme kinetics3 molecular modeling3 distributed systems3 kinetics3 SBGN3 semantics3 Image processing3 in vitro & ex vivo cell culture3 Epigenetics3 Scientific Computing3 microbiomics3 SBGN standard3 Data analysisMathematical modellingBioinformaticsSystems biology3 Metabolic Control Analaysis3 mouse studies3 Liver Zonation3 Ecotoxicology3 mechanistic modeling3 Plant biology3 arabidopsis thaliana3 circadian rhythms3 project management3 Knowledge management3 Data Integtration3 Knowledge integration3 Cheminformatics2 Sulfolobus solfataricus2 Information Retrieval2 Statistically and biologically inspired optimization algorithms2 Gram positive bacteria (Bacillus2 Lactococcus2 sporulation2 Signal transduction in Gram-negative bacteria; Synthetic Microbiology; Single cell gene expression; Regulatory networks; biochemistry; histidine kinase/response regulator systems2 sensitivity analysis2 Phylogenetics2 pH dependent dynamic shift experiments of continuous cultures2 Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory2 Clostridial Genetics2 protein-RNA interactions2 Fluxomics2 localisation studies2 E. coli2 Cellular biology of metals2 HPLC2 Microbiology/ Protein chemistry/ Molecular biology2 bacterial physiology2 X-ray crystallography Structural biology2 Streptomyces2 Carbohydrate Metabolism of Archaea2 Reconstruction of metabolic pathways2 Biology2 molecular simulation2 Streptococcus pneumoniae2 network inference2 yeast2 Computational modelling2 enzymes2 Methode Development2 ODE modelling of biological interaction network2 c++2 diabetes2 Identifiability2 Cell Cycle2 Genetic interaction2 Bioleaching2 metabolic systems biology2 Statistics2 marine2 fungi2 Next Generation Sequencing2 molecular genetic systems2 RNA-Seq2 Automation2 Stem cell2 Systems Biology Graphical Notation2 Nutrition2 nuclear receptors2 human energy metabolism2 signal transduction2 chronobiology2 Network Visualization2 Visualization2 Analytical chemistry2 Data curation2 constraint-based modelling2 Natural Products2 Simulation2 plant metabolism2 secondary metabolites2 Metabolic modelling2 plant pathways2 alternative splicing2 text mining2 biological network analysis2 exposure studies2 genome engineering2 Biorefinery2 Enzymatic reactions2 Provenance2 regenerative medicine2 biochemical enzyme characterization2 outreach2 Mycoremediation2 Diatoms2 Phaeodactylum tricornutum2 Biocuration2 Visualisation2 Editorial Committee2 Curation of molecular interactions2 Disease Maps2 Virology1 Perl1 Chip-chip1 Enterococcus faecalis1 Streptomyces coelicolor1 Data analysis Mathematical modelling Bioinformatics Systems biology1 translatome1 folding pathways1 Streptococcus)1 competence1 germination1 antimicrobial peptides1 C- and N- metabolism1 pathogens1 virulence factors1 protein-lipid interactions1 physicochemical properties of membranes1 Recombineering1 Phylogentics1 Database and data warehouse design1 High-throughput sequence analysis1 Pathogenesis1 Bacterial metabolism | Metabolic engineering | Quorum sensing (bacterial cell-cell communication) | Developmental processes in prokaryotes |1 Mycoplasma pneumoniae1 Mathemical Modeling (in particular: Thermodynamic-Kinetic Modeling)1 model reduction1 reduced-order modeling1 fluorescence protein fusions (transcriptional and translational)1 Microarray Data Analysis1 Microbiology Biochemistry Molecular biology Genetics Regulatory networks Bacterial Cell Biology1 analysis1 fluorescence protein fusions1 Genetics)1 computational economics. Biology: molecular biology1 tissue biology1 social insects.1 staphylococcus aureus1 stress responses Structural biology1 Salmonella1 Chemostats1 Flux analysis Bioenergetics of growth1 Modelling of genetic and signalling networks1 biomechanics1 homogenisation.1 RNA1 Microarray printing1 Database design1 data modelling1 Microbiology/Anaerobic Bacteria/Clostridia Molecular Physiology Stress responses1 stress adaptation of Gram-positiv bacteria1 application of functional genomics technologies in microbiology1 interaction analyses of transcriptional regulators1 analysis and preparation of diagnostic markers for Helicobacter pylori infections Yersiniosis and collagenoses1 Microbiology/ Protein chemistry/ Molecular Biology1 expression systems for pro- and eukayotes1 screening systems for nuclear transport and alternative splicing1 inducible mammalian cell death.1 Software Architecture1 biochemical1 Pseudomonas1 Prokaryotic genetics1 Regulation of carbohydrate metabolism1 Genome based Taxonomy1 Culture Collection1 Extremophiles1 reverse engineering1 chemical engineering1 protein interactions1 Molecular Interactions1 biophysical chemistry1 genetics of archaea1 cultivation of extremophiles1 REST1 Thermodynamics1 Ma1 Limit cycle oscillations1 mRNA1 overflow metabolism in Bacillus1 Genetic regulation1 Medical microbiology1 protein purification1 Food Microbiology1 Listeria monocytogenes1 gene expression1 motif detection1 Trypanosoma brucei1 Streptococcus pneumoniae Molecular microbiology, Bacterial Cell Biology, Genetics1 in vivo1 model management1 Carbohydrate Metabolism of Archaea carbon metabolism, Biochemistry1 enzyme classification1 Downstream Processing1 Automatization1 NK Cells1 Excemplify1 technology transfer1 quality control1 stochastic modelling1 Epigenomics1 Biomolecular Computing1 NGS analysis1 High-throughput data analysis1 insulin signaling1 adiponectin1 Model selection1 Cellular Senescence1 Dynamic Systems1 Gastric cancer1 EGFR signalling1 apoptosis1 Phenome1 Organic Synthesis1 Prostate Cancer1 Bone Biomechanics1 Biomedical Engineering1 in vivo animal models1 Solanum tuberosum1 sequencing1 VREs1 Cloud computing1 High Performance Computing1 Phytopathology1 Microbial Genomics1 de novo genome assembly1 genome annotation1 computational genomics1 gene networks1 Biofilms1 (Bio)Process Design1 evolution1 protein structure1 chemoinformatics1 drug design1 Calcium signalling1 learning1 memory1 cooperativity1 Corynebacterium glutamicum1 Cancer1 optimization1 chromatin1 nuclear organisation1 DNA repair1 Human-Computer Interaction1 Systems Medicine1 Hepatology1 Non-alcoholic fatty liver disease1 energy expenditure1 type 2 diabetes1 human translational research1 energy turnover1 muscle1 promoters and anhancers1 drug targets1 experiments1 lipdomics1 Gut microbiota1 Akkermansia muciniphila1 Obesity1 Endocannabinoid system1 Cell specific KO1 Innate immunity1 Prebiotics1 Probiotics1 Insulin resistance1 Inflammation1 Skeletal muscle physiology and metabolism1 Integrative Human Phsyoiology and Metabolism1 Confocal Immunofluoresence Microscopy visualising Muscle Metabolism1 Endothelial arteriolar and capillary metabolism1 Substrate fluxes across organs measured with stable Isotope Tracers1 Generating in vivo human data to feed metabolic models1 Interface between physiologists and modellers1 neuroanatomy1 endocrinology1 pathology of type 2 diabetes and cardiovascualr disease1 metabolic homeostasis1 Graphical Editors1 Molecular neurobiologist1 single cell transcriptomics1 viral vectors1 neurobiology of energy balance1 Computational Statistics1 nitrogen metabolism1 Actinobacteria1 antibiotic production1 Hedgehog Pathway1 Wnt Pathways1 morhogenic signalling1 plant1 Astronomy1 MAP-kinase1 Medical informatics1 Bioreactor cultivation1 Liver injury and regeneration1 Metabolim1 pathogen host interaction1 validation1 sediment ecology1 Flowcytometery1 PBPK modeling1 Pharmacology1 Pharmacokinetics1 Toxicology1 Cyanobacteria1 Dinoflagellates1 terpenes1 aromatic compounds1 protein expression1 Agile development1 caenorhabditis elegans1 splicing1 plant architecture1 leaf development1 Neuroscience1 NeuroML1 Chemistry1 computational chemistry1 gene clusters1 Biochemical analysis1 protein extraction1 ELISA1 Immunoblots1 Immunoassays1 oral food challenge1 food allergy1 peanut and treenut allergy1 recombinant protein production1 enzyme technology1 Structural biology by NMR1 Carbohydrate modifying proteins1 protein NMR1 lytic polysaccharide monooxygenases1 Metabolic Signaling1 immune signaling1 transcriptional regulation1 ex vivo1 genome mining1 Alga1 Organic residues1 Protein and Enzyme structure and mechanism1 Thermophilic proteins in industrial biocatalysis1 Environmental toxicology1 Mathematical Economics1 Game Theory1 Ligninolytic enzymes1 Biorremediation1 Ligninolytic fungi1 bio-mineralization1 geochemistry1 process engineering1 process design1 reaction engineering1 Semantic Enrichment1 Health Informatics1 reprogramming1 GMP1 GLP1 Catalysed chemical modification of monomeric1 oligomeric & polymer compounds1 reaction monitoring1 analytical characterisation by 1HNMR1 13C-NMR1 2D-NMR(HSQC)1 31P-NMR1 SEC1 EA (CHONS)1 FT-IR etc.1 Depolymerisation techniques in high pressure plug flow reactors and batch reactors1 biological wastewater treatment1 Deep Learning1 Sulfolobus acidocaldarius1 expression systems1 cloning and expression analysis1 Archaeal physiology1 Hyperthermophiles1 Thermoacidohiles1 NanoLUC1 LUC1 industrial biotechnology1 plant molecular physiological ecology1 phylogenomics1 scientific workflows1 neglected tropical diseases1 medical diagnostics1 clinical chemistry1 healthcare1 biomarkers1 Enzyme Discovery1 HT-Cloning1 Enzyme Production1 Assay Development1 Micobiology1 sepsis1 antibiotic resistance1 Gene editiing1 CRISPR/Cas91 fatty acid1 Biological knowledge managament1 pathway curation1 pathway analysis1 reaction networks1 rule-based models1 ODE modeling1 tracer kinetics1 Human physiology1 Immersive Analytics1 collective behaviour1 Network biology1 Data mining1 Literature mining1 Molecular Maps1 Complex human disease1 Boolean Models1 Executable disease networks1 Medicine1 Data integraion1 Drug Curation1 Dissemination1 Funding1 Integration1 General support1 Publication platform1 Simulation of protein-protein interactions1 Knowledge modelling1 Kowledge management1 More...

Matlab55 Molecular Biology54 Transcriptomics48 Molecular biology techniques (RNA/DNA/Protein)47 Biochemistry and protein analysis46 R36 Microbiology35 Bioinformatics33 ODE32 Python30 Computational Systems Biology30 Genetic modification29 Fermentation28 Data Management27 Computational and theoretical biology26 SBML25 Microarray analysis23 Proteomics22 Dynamic modelling21 Biochemistry20 Genetics19 Databases19 Java19 Metabolomics17 Copasi16 Systems Biology16 Mathematica15 Fluorescence and confocal microscopy14 parameter estimation12 Stochastic models12 Genomics11 Chromatography11 Proteomics (2D-PAGE)11 Metabolic Engineering11 qRT-PCR11 linux10 Fluorecence based reporter gene analyses/single cell analyses9 Data integration9 COBRA toolbox9 Perl8 qPCR8 MySQL8 Deterministic models8 Mass spectrometry (LC-MS/MS)8 Cell culture8 differential algebraic equations7 continuous cultivation7 molecular biological techniques (RNA/DNA techniques7 Flow cytometry7 Cell biology6 Cell and tissue culture6 Model organisms6 Web services6 Cytoscape6 Enzyme assay6 fluorescence spectroscopy6 quantitative western blot analysis6 HPLC6 constraint-based modeling6 kinetic modeling6 CellDesigner6 Genetic analysis5 Partial differential equations5 Workflows5 Ruby on Rails5 stimulus response experiments5 quantitative western blot analyses5 Molecular biology techniques (RNA/DNA)5 Flux balance analysis5 HTML5 microbiology techniques5 Cytometry and fluorescent microscopy4 Spectroscopy and structural analysis4 PCR4 Mass spectrometry4 Ontologies4 PHP4 SQL4 Material balance based modeling4 data modeling4 enzymatic analyses4 C programming4 time lapse microscopy4 2-D Gel Electrphoresis4 Bioconductor Packages in R4 stochastic methods4 NMR4 semantic web4 Javascript4 SBGN4 SED-ML4 Neo4J4 c++4 bash4 SBGN-ED4 Pharmacology and toxicology3 Single Cell analysis3 JWS Online3 Chip-chip3 Taverna3 evaluation of process dynamics3 Protein chemical methods (protein overproduction3 mutant strain generation3 XPPAUT3 FACS3 Membrane protein biochemistry3 DNA technology RNA technology Protein analysis Fermentation Mutagenesis3 molecular biological techniques (RNA/DNA techniques)3 GC and LC analysis of metabolites3 In silico Metabolic Network Analysis3 Chemostat culture3 Mutant and Strain Construction3 Enzyme assays3 reporter gene analyses3 Western blot analyses3 network theory3 DNA3 Proteins3 analysis of functional genomics data3 interaction analysis techniques especially SPR measurements3 Statistical tools3 Pathway Tools3 model prediction testing3 enzyme kinetics3 Molecular Dynamics3 transcription analysis3 Machine Learning3 RNA interference3 protein purification3 seek3 RNAseq3 metabolic network visualization3 cobrapy toolbox3 Isolation purification and separation2 Algebraic equations2 Linear equations2 rtPCR2 qtPCR2 Cell designer2 Ruby2 MIRIAM2 DIVA2 quantitative Western analyses)2 Northern analyses)2 cultivation2 northern blot analysis2 including: - Dynamic modelling - Parameter estimation - Optimal experimental design - Dynamic optimization2 including:- Dynamic modelling- Parameter estimation- Optimal experimental design- Dynamic optimization2 Biochemistry of substrate transport. molecular biological techniques (RNA/DNA techniques analyses of transport across cell membranes heterologous expression of transporters2 Chemical cross-linking2 Site-directed mutagenesis2 PDE2 transcriptional analysis (Northern blots2 Optimal experimental design2 Proteomics (Glycoproteins)2 BioMart2 Comparative Genomics2 GC and LC analysis of metabolites | Analysis of signal molecules | Handling of anaerobic bacteria |2 SubtiWiki2 time-resolved microarray analysis2 protein-DNA interactions; gel shifts; footprints; in vitro transcription protein ligan interactions2 metabolic labeling2 absolute quantification2 Fluorescence microscopy2 Immunofluorescence2 protein interaction studies2 fed-batch cultivation2 RNA / DNA Techniques2 bacterial chemostat culture2 Bioreactor experiments/Fermentation (batch2 spectroscopy2 site-directed and random mutagenesis2 Mutant and Strain Construction; RNA / DNA Techniques; RT-RealTime-PCR; 2D-Gels; Metabolite Analysis; Bioreactor Experiments; Flow Cyometry; Microscopy; Single Cell analysis2 Chemostats2 Multiscale and multiphysics modelling2 Gaschromatographic analysis2 molecular biology techniques2 gel-based and gel-free proteomics2 shotgun proteomics2 in vivo crosslinking2 PIPSA2 SYCAMORE2 fortran2 CUDA2 Perl programming2 phage techniques2 PySCeS2 GC and LC/MS analysis of metabolites2 Model selection2 Identifiability analysis2 FBA2 web development2 High Performance Computing2 Statistics2 ChIP-seq2 modeling2 Data Science2 Boolean modeling2 mouse models2 immunohistochemistry2 Jupyter2 cloning2 Docker2 photobiology2 AMICI2 PESTO2 Immunological techniques1 Agent-based modelling1 Spring1 semanticSBML1 ProMOT1 J2EE1 pulsed - FRAP1 purification1 molecular biological techniques (RNA/DNA techniques analyses of transport across cell membranes heterologous expression of transporters1 Biochemistry of substrate transport. molecular biological techniques (RNA/DNA techniquesanalyses of transport across cell membranesheterologous expression of transporters1 FRAP1 Fluorescence and confocal microscopy FRAP/FLIP1 genomic array footprinting1 gene regulation1 The Membrane Enzymology group focuses on the molecular mechanisms of transport and signalling across biological membranes. In other words: How do molecules permeate biological membranes and how at the level of protein molecules are environmental signals s1 engineering principles and approaches from molecular biology and synthetic chemistry are applied. Confocal microscopy and various spectroscopic methods are used to analyze processes at the single cell or even single molecule level.1 C programing1 quantitative RT-PCR); quantitative Western blot analysis; protein purification; reconstitution of membrane-integrated proteins; Biochemistry of substrate transport; Fluorecence based reporter gene analyses/single cell analyses1 surface plasmon resonance spectroscopy; site-directed spin labeling and EPR analysis;1 Dynamic optimization1 sensitivity analysis1 Time-lapse fluorescence microscopy Flow cytometry1 EnsEMBL1 XML1 Phylogenetics1 methods of nonlinear time series analysis1 programming in C1 site-directed spin labeling and EPR spectroscopy1 isothermal titration calorimetry1 Biophysics1 SPINE1 bacterial two-hybrid system1 bacterial chamostat culture1 GeLC-MS/MS1 AQUA1 Logical modelling1 trac (wiki for data management)1 Fluxomics1 transposon mutagenesis1 Time-lapse fluorescence microscopy1 FLAME - Flexible Large-scale Agent-based Modelling Framework.1 GFP expression1 live cell array1 X-ray crystallography electron microscopy Biochemistry and protein analysis1 Chemostat)1 2D-PAGE1 plasmon resonance spectroscopy1 phage transduction1 Molecular biology techniques (DNA/Protein)1 Chemostat culture GC and LC analysis of metabolites1 asymptotic methods1 model reduction.1 RNA1 Gaschromatography1 Creation of Mutants1 stress experiments1 Groovy1 Protein1 Mutant construction1 2-D Gel Electrophoresis1 data modelling1 Chemostat cultures Molecular biology techniques (RNA/DNA) 2-D Gel electrophoresis Gaschromatography Protein overexpression/purification1 molecular biological1 microbiological and immunological techniques1 surface plasmon resonance spectroscopy1 reporter gene analysis1 X-ray crystallographyelectron microscopyBiochemistry and protein analysis1 Maple1 Clustering softwares1 affinity copurification/precipitation1 reverse engineering1 computational platform development1 metabolic netwlrk visualization1 gPROMS1 SABIO-RK http://sabio.villa-bosch.de/1 molecular modeling and simulation1 Protein and RNA structure prediction1 Homology Modelling1 Programming in perl and tcl1 Grails web development framework1 iTRAQ for quantitative proteomics1 madonna1 genetics of hyperthermophilic archaea1 phylogeny1 metagenomics1 GPU1 Thermodynamics1 SABIO-RK database1 in vitro transcription1 DNA affinity chromatography1 EMSA1 RightField1 Reactome1 Bayesian inference1 immunoblot1 Physiology1 graphdatabase1 standards1 Enzyme assays Molecular Biology, Biochemistry1 Protege1 Protein Arrays1 Excemplify1 standard bioinformatic tools1 Surface sensitive techniques1 octave1 Scilab1 Individual-based models1 protein analysis1 life-cell imaging1 CalMorph1 GLM1 Activity-based Protein Profiling1 pulse SILAC1 Microbial Ecology1 micro-Computed Tomography1 omics1 Bioreactor experiments1 AWS1 Research Objects1 energy metabolism1 Maxquant1 SILAC1 high-throughput sequencing1 Vaadin1 Numerical modells1 Comsol1 R package1 analytics1 multi-state modelling1 MCell1 roadrunner1 tellurium1 SABIO-RK1 13C-MFA1 High-throughput phenotyping1 Integrative modeling1 Liquid handling systems1 Automation1 quantitative microscopy1 yEd Graph Editor1 antiSMASH1 CloneManager1 artemis1 indirect calorimetry1 human metabolic research1 geneXplain platform1 BioUML1 stable isotopes1 lipidomics1 Animal models1 Integrative physiology1 Glucose metabolism1 Lipid metabolism1 LPS measurments1 Gut microbiota analysis1 Isotope Ratio Mass Spectrometry1 Confocal Immunofluorescence microscopy1 In vivo measurement of susbstrate fluxes in humans1 Visualisation of muscle and microvascular metabolism in muscle sections1 hyperinsulinemic clamp in rats1 stereotactic surgery1 Morpheus1 GWAS1 WES/WGS1 patient interventions1 gene transfer tools1 metabolic phenotyping1 SBGNViz1 cBioPortal1 PathwayMapper1 ChiBE1 RNATrap1 cre mice and rats1 feeding behaviors1 Fluorescence and confocal microscopyFRAP/FLIP1 MS imaging1 FT-ICR-MS1 Field Flow Fractionation1 IHC1 ISH1 ChiP1 Petri Nets1 Snoopy1 Marcie1 Charlie1 CSS1 editors1 Intravital immaging1 libRoadrunner1 CBMPy1 libSBML1 F-A-M-E1 Supervised Leadning1 Berkeley Madonna1 gpgpu computing1 evolutionary computation1 swarm intelligence1 Plant biology1 Metabolic modelling1 DNA/RNA isolation1 RACE pcr1 GoldenGate1 C. elegans biology1 NeuroML1 Compucell3D1 pbpk1 jupyter notebooks1 1D and 2D SDSPAGE1 ELISA Techniques1 oral food challenge matrix preparation for food allergy research1 data analysis and data management1 food allergen characterisation1 Data2Dynamics1 HMMER1 genome engineering1 plant transformation1 Bifurcation analysis1 Gromacs1 Stata1 Latex1 Solid-state fermentation1 Galaxy1 lattice boltzmann1 REX1 AspenPlus1 JMP1 ICAS1 electrophysiology1 super resolution microscopy1 iPSC culture1 Photoactivated localization microscopy1 Bioreactors operation1 Gas exchange measurements1 screening assays1 enzymatic synthesis1 enzyme engineering1 biomarkers1 In silico Mining1 CRISPR/Cas91 CRISPR/Cas91 experimental tools1 Shell scripting1 NetworkX1 Protein2GO1 wikipathways1 pathvisio1 BioNetGen1 ProcessDB1 VANTED1 MetaCrop1 TEAMwISE1 NaviCell1 ode modelling1 Knowledge Management1 Literature mining1 CaSQ1 GINsim1 Cell Collective1 Newt Editor1 SBGNML1 JSBML1 SBSCL1 InSilico1 More...