I am a Researcher at the National Laboratory of Scientific Computing (LNCC). I am a bioinformatician and my research interests are in data integration and analyses. I use scientific workflows technologies to integrate and analyse data in systems biology, phylogenomics, and functional genomics.
Post Doc (2010 – 2015) of the Department of Computer Science at the COPPE Institute of the Federal University of Rio de Janeiro (Brazil) and was supported by a FAPERJ’s grant “Post-Doc Note 10” (2013 –
Institutions: National Institute of Biologyhttps://orcid.org/0000-0002-1669-6482
Roles: PhD Student
Expertise: Data Management, Visualization, Data analysis, Data analysisMathematical modellingBioinformaticsSystems biology, Data integration, Molecular Biology, Mathematical and statistical modeling, Statistics, Programming, computational biology, Bioinformatics
Tools: Computational and theoretical biology, Data Management, Molecular Biology, Systems Biology, Computational Systems Biology, Databases, Python, Bioinformatics, Data integration, Dynamic modelling, R
Computational Biologist, Young Researcher at Department of Biotechnology and Systems Biology, National Institute of Biology NIB and PhD candidate in Statistics, Ljubljana, Slovenia
Projects: Not specified
Institutions: Not specifiedhttps://orcid.org/0000-0001-8357-2159
Expertise: protein extraction, Immunoblots, Data analysis, peanut and treenut allergy, protein purification, Immunoassays, Mass spectrometry (LC-MS/MS), Molecular Biology, Biochemical analysis, ELISA, oral food challenge, food allergy, Microbiology
Tools: molecular biology techniques, ELISA Techniques, data analysis and data management, food allergen characterisation, 1D and 2D SDSPAGE, Immunological techniques, Mass spectrometry, Biochemistry and protein analysis, immunoblot, oral food challenge matrix preparation for food allergy research, protein purification
Lecturer/Assistant Prof in Computational Biology at the University of Ulster.
My research focusses principally on cholesterol metabolism and its role in cardiovascular disease and atherosclerosis. I have also studied its role in innate immunity and infection. In addition, I have worked on areas of personalised and stratified medicine for cardiovascular disease and rheumatoid arthritis.
My publications can be seen at: https://scholar.google.co.uk/citations?user=oMccxPwAAAAJ&hl=en
Roles: Project Coordinator
Expertise: Image processing, Image analysis, Dynamic Systems, dynamics of biological networks., Data analysis, Identifiability, parameter estimation, Systems Biology, Cellular Senescence, Signalling networks, Databases, Model selection, Cell Cycle
My group investigates dynamic regulation and control mechanisms of cellular signal transduction networks by a combination of theoretical, experimental and computational methods. We seek to make sense of our biological data with the help of mathematical models, which ideally enable us to make valid predictions for new experiments, thereby generating novel biological insights.
Tools: data modelling, Dynamic modelling, Computational Systems Biology, Stochastic models, C programming, differential algebraic equations, Mathematica, Matlab, ODE, Computational and theoretical biology
Modelling of cellular signalling, Dynamic Motifs and Feedback, Quantitative Measures, Theoretical Aspects of Modelling Biological Systems
Senior Research Scientist at SINTEF, Dept. of Biotechnology and Nanomedicine, Research Group Mass Spectrometry
Started out in the field of environmental analytical chemistry and after a few years working in that field, switched to process analysis and chemometrics. Next during my PhD work I came into Life Sciences doing data analysis on microbial batch fermentations (Escherichia coli). During my PhD work my main task was to integrate prior knowledge into data analysis, so called grey modeling. Now my focus lies on white models (based on ordinary differential equations), more specifically building a detailed