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pISA-tree: Standard project directory tree (ISA compliant)
Development of support for standardization of directory trees to suport ISA framework of research organization. We are developing a set of batch/make files to enable creation of trees for storage of assets (data/presentations/protocols/scripts) and description files that hold associated metadata for Investigation / Study / Assay levels.
Programme: NIBSys
SEEK ID: https://fairdomhub.org/projects/57
Public web page: http://ablejec.nib.si/doc
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 11th Nov 2016
Related items
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, FAIRDOM user meeting, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology

Ph.D. in Biotechnology
Research associate at Department of Biotechnology and Systems Biology, National Institute of Biology
Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology

Roles: PhD Student
Expertise: Molecular Biology, Statistics, Bioinformatics, Mathematical and statistical modeling, Programming, Data analysisMathematical modellingBioinformaticsSystems biology, Data Management, Data analysis, Visualization, Data Integration, Computational Biology
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Molecular Biology, Python, R, Systems Biology, Data Integration
Computational Biologist, Young Researcher at Department of Biotechnology and Systems Biology, National Institute of Biology NIB and PhD candidate in Statistics, Ljubljana, Slovenia
Research and development of tools for download/upload communication between pISA-tree and FAIRDOMhub
Snapshots: No snapshots
Studies: FAIRDOMhub API usage in R
Assays: General, _A_99_Empty
Here is a collection of examples of possibilities for API communication in R
Person responsible: Andrej Blejec
Snapshots: No snapshots
Investigation: pISA to FAIRDOMhub communication
Assays: General, _A_99_Empty
Empty assay
Investigation: pISA to FAIRDOMhub communication
Study: FAIRDOMhub API usage in R
Organisms: No organisms
Models: No Models
SOPs: No SOPs
Data files: No Data files
General sandbox
Investigation: pISA to FAIRDOMhub communication
Study: FAIRDOMhub API usage in R
Organisms: No organisms
Models: No Models
SOPs: No SOPs
Data files: Test API connection to FAIRDOMHub, Test API connection to FAIRDOMHub
How to connect to the FAIRDOM SEEK with the collection of their APIs.
Creators: None
Submitter: Andrej Blejec
pISA-tree: Standard project directory tree (ISA-tab compliant) - NIB-SI/pISA
https://github.com/NIB-SI/pISA/
Creators: Maja Zagorscak, Andrej Blejec
Submitter: Maja Zagorscak
Investigations: No Investigations
Studies: No Studies
Assays: No Assays