pISA-tree
OverviewpISA-tree: Standard project directory tree (ISA compliant)
Development of support for standardization of directory trees to suport ISA framework of research organization. We are developing a set of batch/make files to enable creation of trees for storage of assets (data/presentations/protocols/scripts) and description files that hold associated metadata for Investigation / Study / Assay levels.
Programme: NIBSys
SEEK ID: https://fairdomhub.org/projects/57
Public web page: http://ablejec.nib.si/doc
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 11th Nov 2016
Related items
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, FAIRDOM user meeting, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology
https://orcid.org/0000-0001-5906-8569
Ph.D. in Biotechnology Research associate at Department of Biotechnology and Systems Biology, National Institute of Biology
Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology
https://orcid.org/0000-0002-1669-6482
Computational Biologist, Young Researcher at Department of Biotechnology and Systems Biology, National Institute of Biology NIB and PhD candidate in Statistics, Ljubljana, Slovenia
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Research and development of tools for download/upload communication between pISA-tree and FAIRDOMhub
Here is a collection of examples of possibilities for API communication in R
Submitter: Andrej Blejec
Investigation: pISA to FAIRDOMhub communication
Assays: General, _A_99_Empty
Empty assay
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: pISA to FAIRDOMhub communication
Study: FAIRDOMhub API usage in R
General sandbox
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: pISA to FAIRDOMhub communication
Study: FAIRDOMhub API usage in R
Download
How to connect to the FAIRDOM SEEK with the collection of their APIs.
Creators: None
Submitter: Andrej Blejec
pISA-tree: Standard project directory tree (ISA-tab compliant) - NIB-SI/pISA https://github.com/NIB-SI/pISA/
Creators: Maja Zagorscak, Andrej Blejec
Submitter: Maja Zagorscak
