pISA-tree
OverviewpISA-tree: Standard project directory tree (ISA compliant)
Development of support for standardization of directory trees to suport ISA framework of research organization. We are developing a set of batch/make files to enable creation of trees for storage of assets (data/presentations/protocols/scripts) and description files that hold associated metadata for Investigation / Study / Assay levels.
Programme: NIBSys
SEEK ID: https://fairdomhub.org/projects/57
Public web page: http://ablejec.nib.si/doc
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 11th Nov 2016
Related items
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, FAIRDOM user meeting, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato
Institutions: National Institute of Biology
https://orcid.org/0000-0001-5906-8569
PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, tst, tst2
Institutions: National Institute of Biology, tst
https://orcid.org/0000-0002-1669-6482
Computational Biologist and Biostatistician at Department of Biotechnology and Systems Biology, National Institute of Biology (NIB)
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Metadata
Investigation: _I_Test
Short Name: Test
Title: Test investigation
Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_Show
Assays: _A_Work-R, _I_Test-files, _S_Show-files
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_Show
Assays: _A_Work-R, _I_Test-files, _S_Show-files
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_Show
Assays: _A_Work-R, _I_Test-files, _S_Show-files
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_Show
Assays: _A_Work-R, _I_Test-files, _S_Show-files
Investigation: _I_Test Short Name: Test Title: Test investigation Description: Investigation - for demonstration purposes. Phenodata: ./phenodata_20191015.txt pISA Investigation creation date: 2019-10-15 pISA Investigation creator: Andrej Blejec Principal investigator: * Investigation Person Address: https://orcid.org/0000-0001-7484-6031 Investigation Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_Show
Assays: _A_Work-R, _I_Test-files, _S_Show-files
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_Test 2022-05-08 23:13:06
Assays: _A_Work-R, _S_Show-files
Investigation files _I_Test
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Investigation files _I_Test
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_Sigma 2022-04-17 00:52:30
Assays: _A_Work-R, _S_Show-files
Investigation files _I_Test
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_Sigma 2022-04-17 00:48:38
Assays: _A_Work-R, _S_Show-files
Investigation files _I_Test
Study: _S_Show Short Name: Show Title: Testing study Description: Test study for demonstration only. Raw Data: pISA Study creation date: 2019-10-15 pISA Study creator: Andrej Blejec Principal investigator: * Study Person Address: https://orcid.org/0000-0001-7484-6031 Study Person Address: https://orcid.org/0000-0003-3644-7827 License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_Sigma 2022-04-17 00:30:01
Assays: _A_Work-R, _S_Show-files
Investigation files _I_Test
Here is a collection of examples of possibilities for API communication in R
General sandbox
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Study: FAIRDOMhub API usage in R
Empty assay
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Study: FAIRDOMhub API usage in R
Files connected to investigation: _I_Test
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:30:01
Study: Investigation files
Files connected to study: _S_Show
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:30:01
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:30:01
Study: _S_Show
Files connected to investigation: _I_Test
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:48:38
Study: Investigation files
Files connected to study: _S_Show
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:48:38
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:48:38
Study: _S_Show
Files connected to investigation: _I_Test
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:52:30
Study: Investigation files
Files connected to study: _S_Show
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:52:30
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 00:52:30
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:08:17
Study: _S_Show
Files connected to investigation: _I_Test
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:13:51
Study: Investigation files
Files connected to study: _S_Show
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:13:51
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:20:06
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:24:09
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:36:26
Study: _S_Show
Assay: _A_Work-R Short Name: Work-R Assay Class: DRY Assay Type: R Title: Working in assay Description: Not really working, just testing :) pISA Assay creation date: 2019-10-15 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Sharing permission: Public Phenodata: ../../phenodata_20191015.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Sigma 2022-04-17 01:43:59
Study: _S_Show
Files connected to investigation: _I_Test
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Test
Study: Investigation files
Files connected to study: _S_Show
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_Test
Study: _S_Show
Download
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/_S_Show/_A_Work-R/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_Demo/_I_Test/
Creator: Andrej Blejec
Submitter: Andrej Blejec
pISA-tree: Standard project directory tree (ISA-tab compliant) - NIB-SI/pISA https://github.com/NIB-SI/pISA/
Creators: Maja Zagorscak, Andrej Blejec
Submitter: Maja Zagorscak
