The FAIRDOMHub

14 items tagged with 'Programming'.

People (14)

Institutions: University of Tübingen

Expertise: Computational Systems Biology, Constraint-based Modelling, Systems Biology, Genome-scale Metabolic Models, Programming, Curation

Tools: SBML, Python, libSBML, COBRApy, COBRA toolbox, Jupyter

Gudrun Gygli

Well rounded biologist/biotechnologist/biochemist/enzymologist/bioinformatician/computational biologist.

Maja Zagorscak

Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato

Institutions: National Institute of Biology

https://orcid.org/0000-0002-1669-6482

Computational Biologist, Young Researcher at Department of Biotechnology and Systems Biology, National Institute of Biology NIB and PhD candidate in Statistics, Ljubljana, Slovenia

Daniel Weindl

Projects: INCOME

Institutions: ICB Helmholtz Center Munich

https://orcid.org/0000-0001-9963-6057

Roles: Postdoc

Expertise: Dynamic modelling, Biochemistry, Metabolomics, Programming, Data Integration, Parameter estimation

Tools: AMICI, Python, c++, Parameter estimation, PEtab

Steffen Brinkmann

Projects: Not specified

Institutions: Not specified

Expertise: Programming, Astronomy

Tools: editors, linux

This is me

Finn Bacall

Projects: SysMO DB, FAIRDOM, FAIRDOM Templates

Institutions: University of Manchester - Department of Computer Science

https://orcid.org/0000-0002-0048-3300

Expertise: Programming

Tools: Ruby on Rails, Javascript, HTML

Alex Bossers

Projects: Not specified

Institutions: Not specified

https://orcid.org/0000-0002-6586-717X

Expertise: Bioinformatics, Molecular Biology, Next Generation Sequencing, metagenomics, Proteomics, Programming

Tools: bash, Perl, R, Genomics, Proteomics, Biochemistry and protein analysis

Research scientist in multi-Omics, molecular (cell)biology and bioinformatics.

Markus Stepath

Projects: IMOMESIC

Institutions: German Cancer Research Center (DKFZ)

Expertise: Programming, Data Management, Downstream Processing, Methode Development, Mass spectrometry (LC-MS/MS), Automatization, NK Cells, Immunology, Excemplify

Tools: Mass spectrometry (LC-MS/MS), Chromatography, Protein Arrays, Flow cytometry, Excemplify

Morgiane Richard

Projects: KOSMOBAC

Institutions: University of Aberdeen

Expertise: Mathematical modelling, Physics, Mathematics, Programming

Tools: Computational and theoretical biology, ODE, Algebraic equations, differential algebraic equations, data modeling, C programming, Computational Systems Biology

My background is physics engineering & biomedical engineering. I did my PhD in Surrey on the modelling of response of mammalian cells to radiation of different qualities. I have been working at the University of Aberdeen since November 2007 as a theoreticien research fellow of the KOSMOBAC project. We are investigating the homeostasis of ions in bacteria E. coli. I have been working at a model of the buffering capacity of the cytopplasm, arising from the presence of weak acids and bases. We ...

Ksenia Guseva

Projects: KOSMOBAC

Institutions: University of Aberdeen

Expertise: Mathematical modelling, Physics, Programming

Tools: Computational and theoretical biology, ODE, linux, Stochastic models, PDE, C programing

Simon Borger

Projects: TRANSLUCENT

Institutions: Humboldt-Universität zu Berlin

Expertise: Physics, Mathematics, Programming, Dynamics and Control of Biological Networks

Tools: Python, Matlab, R, MySQL, XPPAUT

Armin Ehrenreich

Projects: COSMIC

Institutions: University of Goettingen

Expertise: Microbiology, Molecular Biology, Programming, Anaerobic Microbiology, Chemostats, HPLC, Clostridium, Microarray printing, Microarray experiments with prokaryotes, Database design

Tools: Microbiology, Java, Fermentation, Microarray analysis, Molecular biology techniques (RNA/DNA/Protein), qRT-PCR, HPLC, Groovy

I have a permanent position at the department of microbiology at the TU-München. As a microbiologist I am interested in the regulation of central metabolism in prokaryotic organisms with different types of energy metabolism such as Clostridia, Bacilli and acetic acid bacteria. Furthermore I worked as a software developer for several years in a bioinformatics company and I am very interested in bioinformatics and handling of large amounts of data.