- Home
- Institutions Index
- Humboldt-Universität zu Berlin
Related items
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Humboldt-Universität zu Berlin
I am working at the boundary of wet-labs and mathematical modeling, trying to understand the regulation of the eukaryotic cell cycle. I started working with yeast in a group of Systems Biology (Prof. Edda Klipp, Humboldt University, Berlin). Before that I studied biology, engineering and did research on the nuclear pore complex.
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Projects: TRANSLUCENT, HUMET Startup
Institutions: Humboldt-Universität zu Berlin, Humboldt University Berlin
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Humboldt-Universität zu Berlin
Projects: ERNEST Mapping Group Pilot Study, COVID-19 Disease Map
Institutions: Humboldt-Universität zu Berlin
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Expertise: Bioinformatics, Data Management
I created this for all SysMo Modellers
http://www.semanticsbml.org/aym Annotate Your Model
There you can annotate your non SBML models with biological terms (MIRIAM annotations). As a cool extra you can view you model source code with inserted biological infomation.
Together with this http://www.semanticsbml.org/semanticSBML
you can serach for similar BioModels. The similarity search is based on MIRIAM annotations that are attached to you model. AYM also allows you to create annotations without
...
Projects: Kinetics on the move - Workshop 2016, Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), FAIRDOM user meeting, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: Charité University Medicine Berlin, Humboldt-Universität zu Berlin, Humboldt University Berlin

Roles: Project Coordinator
Expertise: Computational modelling, Metabolic Models, Kinetic modelling, Liver, Metabolic Networks, Computational Biology
Tools: SBML, SED-ML, ODE, roadrunner, tellurium, Cytoscape, jupyter notebooks
We are investigating liver metabolism and function with the help of computational models and methods.
Read more about the LiSyM junior group at: www.livermetabolism.com
Junior Group Leader
Dr. Matthias König
Institute for Theoretical Biology
Humboldt-University Berlin
Invalidenstraße 43, 10117 Berlin, Germany
phone +49 30 2093-8450
konigmatt@googlemail.com
The liver is the central metabolic organ of our body playing a crucial role in the clearance of drugs, xenobiotics and numerous metabolites
...
Projects: HUMET Startup, COMBINE Multicellular Modelling
Institutions: Humboldt University Berlin, Humboldt-Universität zu Berlin
Here we share resources and best practices to develop a disease map for COVID-19. The project is progressing as a broad community-driven effort. We aim to establish a knowledge repository on virus-host interaction mechanisms specific to the SARS-CoV-2. The COVID-19 Disease Map is an assembly of molecular interaction diagrams established based on literature evidence.
Programme: Disease Maps
Public web page: http://doi.org/10.17881/covid19-disease-map
Programme: ERNEST - European Research Network on Signal Transduction
Public web page: Not specified
Organisms: Not specified
We will contribute to the LiSyM Research Network an open source, freely available and reproducible multiscale model of the human liver from single cell metabolism to whole liver function. The model will be available in existing standards of systems biology, provide standardized interfaces for data integration and be fully annotated to available biological, medical and computational ontologies. All data, models and source code will be shared within the LiSyM Research Network and made available to
...
Programme: LiSyM - Systems Medicine of the Liver
Public web page: https://livermetabolism.com
Organisms: Homo sapiens, Mus musculus, Rattus norvegicus
Programme: COMBINE (Computational Modeling in Biology Network)
Public web page: https://multicellml.org/
Organisms: Not specified
Systems Biology studies the properties and phenotypes that emerge from the interaction of biomolecules where such properties are not obvious from those of the individual molecules. By connecting fields such as genomics, proteomics, bioinformatics, mathematics, cell biology, genetics, mathematics, engineering and computer sciences, Systems Biology enables discovery of yet unknown principles underlying the functioning of living cells. At the same time, testable and predictive models of complex
...
Programme: Independent Projects
Public web page: http://www.icysb.se/
Organisms: Saccharomyces cerevisiae
Gene interaction networks and models of cation homeostasis in Saccharomyces cerevisiae
Programme: SysMO
Public web page: http://www.translucent-network.org/
Organisms: Saccharomyces cerevisiae