Kinetics on the move - Workshop 2016
OverviewThe workshop focuses on the publication, curation, retrieval, and usage of kinetic data from the reaction kinetics database SABIO-RK and on the use of data in modeling. There will be experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
SEEK ID: https://fairdomhub.org/projects/49
Public web page: http://www.h-its.org/event/kinetics-on-the-move/
Organisms: Bacillus subtilis, Acidithiobacillus caldus, Arabidopsis thaliana
FAIRDOM PALs: No PALs for this Project
Project created: 19th May 2016
Related items
Reproducibility of results is fundamental to all sciences. In computational biology, standard formats like Systems Biology Markup Language (SBML), CellML, or NeuroML enable the exchange of simulation models, and foster interoperability between software tools importing and exporting these formats.
My main research interest is in developing methods and tools that (1) improve the reuse of computational models in biology, (2) ensure reproducibility of modeling results and (3) that lead to easier
...
Projects: SYSTERACT, Kinetics on the move - Workshop 2016, BESTER
Institutions: University of Rostock
orcid.org/0000-0002-1678-0051
Projects: SysMetEx, Kinetics on the move - Workshop 2016
Institutions: Università della Svizzera Italiana
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, EraCoBiotech 2 nd call proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER, TRALAMINOL, Sustainable co-production, INDIE - Biotechnological production of sustainable indole, Project/Kublanov
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology
orcid.org/0000-0003-3540-0402
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project
...
Software developer for FAIRDOM
Snapshots: No snapshots
Download
This is BIOMD0000000005.
Creators: Ron Henkel, Dagmar Waltemath
Contributor: Ron Henkel
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Copasi
A Standard Operating Procedure (SOP) is a document consisting of step-by-step information on how to execute a task. An existing SOP may need to just be modified and updated.
Creator: Olga Krebs
Contributor: Deleted contributor
Abstract:
Authors: Wolfgang Müller, Martin Golebiewski, Renate Kania, Maja Rey, Andreas Weidemann, Ulrike Wittig, Bittkowski Meik
Date Published: 1st Mar 2017
Journal: Datenbank Spektrum
Abstract (Expand)
Author: Matthias König
Date Published: 2016
Journal: F1000Res
Abstract:
Author: Crouch Thomas H.,Klee Claude B.
Date Published: 1st Aug 1980
Journal: Biochemistry
Abstract:
Authors: Antoine Buetti-Dinh, Dethlefsen Olga,Friedman Ran,Dopson Mark
Date Published: 26th May 2016
Journal: Not specified
Abstract (Expand)
Author: Hirose Y.,Kaida H.,Kawahara A.,Matono S.,Tanaka T.,Kurata S.,Kage M.,Ishibashi M.,Abe T.
Date Published: 25th May 2016
Journal: Nucl Med Commun
Abstract (Expand)
Authors: Melanie Stefan, Edelstein S. J.,Le Novere N.
Date Published: 31st Jul 2008
Journal: Proc Natl Acad Sci U S A
Abstract (Expand)
Author: Tyson J. J.
Date Published: 15th Aug 1991
Journal: Proc Natl Acad Sci U S A
Presentation at the 10th anniversary of SABIO-RK, Heidelberg 2016
Creator: Dagmar Waltemath
Contributor: Dagmar Waltemath
External Link
Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/3702
Synonyms: thale-cress, mouse-ear cress
Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/33059
Synonyms: Thiobacillus caldus
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1423
The 16th conference on Computational Methods in Systems Biology (CMSB 2018) will take place on the 12th to 14th September 2018 in Brno, Czech Republic. Its aim is to bring together researchers from across biological, mathematical, computational, and physical sciences who are interested in the study, modelling, simulation, advanced analysis, and design of biological systems.
CMSB 2018 will be hosted at Faculty of Informatics, Masaryk University, Brno. Brno is the city where the modern genetics has
...
Country: 
CZ
City: Brno
