The workshop focuses on the publication, curation, retrieval, and usage of kinetic data from the reaction kinetics database SABIO-RK and on the use of data in modeling. There will be experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.
SEEK ID: https://fairdomhub.org/projects/49
Public web page: http://www.h-its.org/event/kinetics-on-the-move/
FAIRDOM PALs: No PALs for this Project
Project created: 19th May 2016
- People (40)
- Institutions (8)
- Investigations (1+2)
- Studies (1+2)
- Assays (1+3)
- Data files (3+7)
- Models (1+3)
- SOPs (1)
- Publications (7)
- Presentations (4+3)
- Events (1+2)
Projects: FAIRDOM, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, MS_DILI, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training, New LiSyM project, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"https://orcid.org/0000-0002-8683-7084
Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and
I'm a biologist working in the field of scientific datases as a biocurator.
This is BIOMD0000000005.
Contributor: Ron Henkel
Model type: Ordinary differential equations (ODE)
Model format: SBML
A Standard Operating Procedure (SOP) is a document consisting of step-by-step information on how to execute a task. An existing SOP may need to just be modified and updated.
Creator: Olga Krebs
Contributor: Deleted contributor
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 2 hidden items
Author: Matthias König
Date Published: 2016
Citation: F1000Res 5 : 1736
Authors: Thomas H. Crouch, Claude B. Klee
Date Published: 1st Aug 1980
Citation: Biochemistry 19(16) : 3692
Authors: Antoine Buetti-Dinh, Olga Dethlefsen, Ran Friedman, Mark Dopson
Date Published: 26th May 2016
Journal: Not specified
Citation: Transcriptomic analysis reveals how a lack of potassium ions increases Sulfolobus acidocaldarius sensitivity to pH changes
Authors: Y. Hirose, H. Kaida, A. Kawahara, S. Matono, T. Tanaka, S. Kurata, M. Kage, M. Ishibashi, T. Abe
Date Published: 25th May 2016
Journal: Nucl Med Commun
PubMed ID: 27218430
Citation: Nucl Med Commun. 2016 May 23.
Authors: Melanie Stefan, S. J. Edelstein, N. Le Novere
Date Published: 31st Jul 2008
Journal: Proc Natl Acad Sci U S A
PubMed ID: 18669651
Citation: Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10768-73. doi: 10.1073/pnas.0804672105. Epub 2008 Jul 31.
Author: J. J. Tyson
Date Published: 15th Aug 1991
Journal: Proc Natl Acad Sci U S A
PubMed ID: 1831270
Citation: Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7328-32.
The 16th conference on Computational Methods in Systems Biology (CMSB 2018) will take place on the 12th to 14th September 2018 in Brno, Czech Republic. Its aim is to bring together researchers from across biological, mathematical, computational, and physical sciences who are interested in the study, modelling, simulation, advanced analysis, and design of biological systems.
CMSB 2018 will be hosted at Faculty of Informatics, Masaryk University, Brno. Brno is the city where the modern genetics has