SEEK ID: https://fairdomhub.org/people/432
Location: Germany
ORCID: Not specified
Joined: 26th May 2016
Expertise: Data Management, Databases
Tools: MySQL, Java, graphdatabase, Neo4J
Related items
- Programmes (1)
- Projects (3)
- Institutions (2)
- Investigations (1)
- Studies (1)
- Assays (1)
- Data files (1)
- Models (1)
- Publications (1)
- Presentations (7+1)
The German Network for Bioinformatics Infrastructure - de.NBI offers first class bioinformatics services including training and education to users in basic and applied life sciences research. In this network 40 projects belonging to eight service centers provide services that cover a wide variety of methods (genomics, proteomics, ...) and applications (from plants to humans). de.NBI-SysBio is the Systems Biology Service Center of de.NBI. In collaboration with FAIRDOM, de.NBI-SysBio serves the ...
Projects: de.NBI-SysBio, ExtremoPharm, ZucAt, Kinetics on the move - Workshop 2016, Example use cases, MIX-UP, Working Group Nicole Radde, MPIEvolBio-SciComp, SABIO-VIS
Web page: http://www.denbi.de
The workshop focuses on the publication, curation, retrieval, and usage of kinetic data from the reaction kinetics database SABIO-RK and on the use of data in modeling. There will be experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: http://www.h-its.org/event/kinetics-on-the-move/
The Systems Biology Service Center of de.NBI (de.NBI-SysBio) provides bioinformatics support and a standards-based data management for systems biology projects, with focus on the provenance of experimental results and on the reproducibility of modeling experiments, as well as high-quality curated biochemical data to modelers and experimentalists. The node concentrates on two tools for the data management in life sciences research: SEEK, a catalogue for storage, registration and exchange of data ...
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: Not specified
Organisms: Not specified
Public showcase and collection of training material
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: http://www.denbi.de
Organisms: Not specified
Submitter: Ron Henkel
Snapshots: No snapshots
Submitter: Ron Henkel
Investigation: Hands-on: Model Management in SEEK
Snapshots: No snapshots
Submitter: Ron Henkel
Biological problem addressed: Cell Cycle
Investigation: Hands-on: Model Management in SEEK
Organisms: No organisms
Models: BIOMD0000000005 from BioModels Database
SOPs: No SOPs
Data files: SEDML for BIOMD0000000005
Snapshots: No snapshots
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Investigations: Hands-on: Model Management in SEEK
This is BIOMD0000000005.
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Copasi
Organism: Not specified
Investigations: Hands-on: Model Management in SEEK
Abstract (Expand)
Author: J. J. Tyson
Date Published: 15th Aug 1991
Publication Type: Not specified
PubMed ID: 1831270
Citation: Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7328-32.
Hint Task 4. Please refer to the related task sheet: https://fairdomhub.org/presentations/251
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Hint Task 5. Please refer to the related task sheet: https://fairdomhub.org/presentations/251
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Hint Task 9A. Please refer to the related task sheet: https://fairdomhub.org/presentations/251
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Hint Task 9. Please refer to the related task sheet: https://fairdomhub.org/presentations/251
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
The paper by Tyson for the Hands-on Model Management in SEEK. Please refer to the related task sheet: https://fairdomhub.org/presentations/251
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Here you find the Tasks for todays Hands-on Model Management in SEEK session
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Written by Martin Scharm (University of Rostock), Ron Henkel (University of Rostock), Dagmar Waltemath (University of Rostock), Olaf Wolkenhauer (University of Rostock, Stellenbosch University), and presented by Martin Scharm (University of Rostock) as part of the Reproducible and Citable Data and Models Workshop in Warnemünde, Germany. September 14th - 16th 2015.
Creators: Natalie Stanford, Dagmar Waltemath, Olaf Wolkenhauer, Ron Henkel, Martin Scharm (University of Rostock)
Submitter: Natalie Stanford