Projects: MESI-STRAT
Institutions: Charité University Medicine Berlin

Tools: R, Python, Data Science, Bioinformatics, Single Cell analysis
PhD student
Projects: DigiSal, GenoSysFat, SEEK tutorial for DigiSal
Institutions: Norwegian University of Life Sciences

Expertise: Computational Systems Biology, Bioinformatics, Data analysis
Researcher at the DigiSal project. Recently graduated M.Sc. in Chemistry and Biotechnology.
Projects: Working Group Nicole Radde, SteaPKMod
Institutions: University of Stuttgart

Currently I focuse on the integration of data into multi-scale models with statistical methods and uncertainty tracking in the research unit QuaLiPerF.
Projects: BioCreative VII
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Expertise: Physics, Mathematics
Tools: Python, Machine Learning, Data analysis
Projects: FAIRDOM, BioCreative VII, The BeeProject, SDBV/HITS
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

Expertise: Data analysis, Computational Systems Biology, Databases, Data Management, Table Curation
Tools: Machine Learning, Python, Java, standards, Data Integration
Projects: COVID-19 Disease Map
Institutions: National Institute of Informatics

Expertise: Bioinformatics, Computational Systems Biology, Curation, Data analysis, Systems Biology
Tools: SBML, Python, Matlab, Systems Biology, Bioinformatics
Projects: Kinetics on the move - Workshop 2016, COVID-19 Disease Map, NMTrypI - New Medicines for Trypanosomatidic Infections, CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation
Institutions: Kinetics on the move Workshop at HITS, Heidelberg Institute for Theoretical Studies (HITS gGmbH), University of Eastern Finland (UEF)

Projects: COVID-19 Disease Map
Institutions: University of Tübingen

Projects: COVID-19 Disease Map
Institutions: University Maastricht

Expertise: Knowledge integration, Curation, Data Integration, rare diseases, Systems Biology, GMP, GCP, Neuroscience
Tools: wikipathways, pathvisio, Cytoscape, R, Python, Statistics
Projects: EmPowerPutida, COVID-19 Disease Map
Institutions: Wageningen University & Research, University Maastricht

Expertise: Systems Biology, Mathematical modelling, Biotechnology, Synthetic Biology, Metabolic Engineering, metabolism, Metabolic Networks, SARS-CoV 2, COVID-19, Pathway Curation, Pathway Analysis, Network Analysis
Tools: Matlab, Computational Systems Biology, Flux balance analysis, omics analysis, Python, R, Constraint-based analysis
My research interest is in studying cellular and molecular pathways of COVID-19 disease.
Projects: COVID-19 Disease Map
Institutions: Monash University

Expertise: Bioinformatics, Machine Learning, Data analysis, Deep Learning, Molecular Biology, Plant biology
Tools: Python, R, SQL, High Performance Computing
Projects: COVID-19 Disease Map
Institutions: Pondicherry University

Expertise: Bioinformatics, Transcriptomics, Computational Systems Biology, Data analysis
Tools: Data Integration, R, Databases, Python, Cytoscape, network theory
PhD Student at Centre for Bioinformatics, Pondicherry University, Pondicherry, India.
Projects: Not specified
Institutions: Not specified
Expertise: Deep Learning
Tools: R, Python, Shell scripting
Projects: COVID-19 Disease Map
Institutions: Ontario Institute for Cancer Research

Expertise: Software Engineering, Bioinformatics, Biocuration
Projects: COVID-19 Disease Map
Institutions: European Molecular Biology Laboratory

Expertise: protein-protein interactions, Databases, Pathways, lipidomics, Data analysis, Visualization
Projects: CoolWine
Institutions: Norwegian University of Science and Technology

Expertise: Systems Biology
Tools: network theory, FBA, R, Python, Statistics
PhD candidate working on the CoolWine project
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis, Boolean modeling of Parkinson disease map
Institutions: Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg

Expertise: Machine Learning, Deep Learning, Modeling, Medical microbiology, Molecular Biology
Tools: Python, R, Matlab, Javascript, SBML, Dynamic modelling, microbiology techniques, Shell scripting
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis
Institutions: Inria Saclay - Île-de-France, University of Évry Val d'Essonne

Expertise: Computational Systems Biology
Tools: Petri Nets, constraint programming, model checking, Python, ODE Modelling, Prolog
Projects: COVID-19 Disease Map
Institutions: University of Tübingen

Expertise: Curation, Computational Systems Biology, Constraint-based Modelling, Systems Biology
Tools: SBML, Python, cobrapy toolbox, CellDesigner, libSBML, jupyter notebooks
Projects: COVID-19 Disease Map
Institutions: University of Tübingen

Expertise: Systems Biology, Computational Systems Biology, Databases, Dynamic modelling, Java, Mathematical modelling, Metabolic Engineering, Disease Maps, Curation, Modeling, Data Integration, Constraint-based Modelling, Parameter estimation
Tools: SBML, SBGN, SBGNML, JSBML, Jupyter, Python, cobrapy toolbox, SBSCL, InSilico, Kinetic Modeling
Andreas Dräger is the assistant professor for Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens at the University of Tübingen in Germany. His group aims to combat the spreading antibiotics resistances by using mathematical modeling and computer simulation of bacterial systems up to entire microbiomes and host-pathogen interactions. In doing so, his group actively contributes to the advancement of various COMBINE standards.
Projects: COVID-19 Disease Map
Institutions: University of Pittsburgh
Expertise: Mathematical modelling, Network Analysis, Dynamics and Control of Biological Networks
Tools: R, Matlab, Python, ODE Modelling
Projects: COVID-19 Disease Map
Institutions: Barcelona Supercomputing Center

I completed my BSc in Biology and MSc in Cell Biology by the University of Valencia. During my last undergrad year I participated in synthetic biology’s iGEM competition where I dove in the use of models in Biology, which pushed me to pursue a PhD in the Department of Applied Mathematics in the Technical University of Valencia.
My research on Metabolic Engineering of hydrogen in cyanobacteria led me to be visiting researcher at Uppsala University, Denmark Technical University and EMBL Heidelberg. ...
Projects: COVID-19 Disease Map
Institutions: ICAHN Icahn School of Medicine at Mount Sinai

Expertise: Reaction Networks, Rule-based Models, Mechanistic Modelling
Experienced in developing rule-based models of complex biochemical reaction networks, as well as developing new rule-based approaches. Extensive experience with BioNetGen, a tool for building complex reaction networks succinctly with rules. Currently working with Jonathan Karr at Dept. Genetics & Genomics at Mount Sinai School of Medicine on extending rule-based approaches to transcription, translation and other sequence-based mechanisms.
Projects: COVID-19 Disease Map
Institutions: Luxembourg Centre for Systems Biomedicine (LCSB)

Expertise: Biological knowledge managament, Systems Biology, Biocuration
Tools: CellDesigner, Cytoscape, Python, Shell scripting, NetworkX, Protein2GO
Projects: Simulation Foundries, CML for thermophysical properties of mixtures, Test Project (dummy), Towards Reproducible Enzyme Modeling
Institutions: University of Stuttgart, Karlsruhe Institute of Technology (KIT)

Expertise: enzyme kinetics, enzymes, Enzymatic reactions, biochemical enzyme characterization, Biochemistry, molecular simulation, molecular modeling, Programming, Bioinformatics, Computational Biology
Tools: Gromacs, Python, Molecular Dynamics, bash, Biochemistry, Bioinformatics, Biochemistry and protein analysis, Enzyme assay, enzyme kinetics, isothermal titration calorimetry, dynamic light scattering, Spectrophotometry
Polyglot European Scientist. I thrive working in interdisciplinary environments combining the study of enzyme reactions and mechanisms with bioinformatics, molecular modelling, automated data analysis and data stewardship.
Expertise: Software Engineering, Machine Learning
Tools: Python, cobrapy toolbox
Projects: pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, tst, tst2
Institutions: National Institute of Biology, tst

Expertise: Molecular Biology, Statistics, Bioinformatics, Mathematical and statistical modeling, Programming, Data analysisMathematical modellingBioinformaticsSystems biology, Data Management, Data analysis, Visualization, Data Integration, Computational Biology
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Molecular Biology, Python, R, Systems Biology, Data Integration
Computational Biologist and Biostatistician at Department of Biotechnology and Systems Biology, National Institute of Biology (NIB)
Projects: WG Infrastructure for Translational Research, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Translational Bioinformatics, Medical Biometry, Epidemiology, Medical Informatics
Institutions: University Medical Center Göttingen, University of Tübingen, University of Saarland

Expertise: Programming, Bioinformatics, Data Management, Databases, Java, Python, R, standards, Data Integration
Tools: Python, Bioinformatics, Data Management, Databases, R, Java, Data Integration
Institutions: Latvia University of Agriculture
Expertise: Python, Systems Biology, Dynamic modelling, Mathematical modelling
Tools: COBRA toolbox, cobrapy toolbox, Python, SBML, Copasi, Computational Systems Biology
Projects: OXYMOD
Institutions: Norwegian University of Science and Technology

Expertise: protein NMR, lytic polysaccharide monooxygenases
Tools: NMR, Molecular Biology, Biochemistry and protein analysis, Python
Expertise: Dynamic modelling, Biochemistry, Metabolomics, Programming, Data Integration, Parameter estimation
Tools: AMICI, Python, c++, Parameter estimation, PEtab
Projects: COMBINE Multicellular Modelling
Institutions: University College London (UCL)

Expertise: Dynamic modelling, Databases, Mathematical modelling, standards, Neuroscience, NeuroML
Projects: SAFE-Aqua, Biomics Projects
Institutions: Institut Pasteur

Biochemist currently keeping busy as: Research Data Manager (Vrije Universiteit Amsterdam), Software Engineer (Heidelberg University) and member of the SBML Development Team (Caltech).
Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, WURSynBio
Institutions: Wageningen University & Research

Expertise: Bioinformatics, Systems Biology, Agent-based modelling, Dynamic modelling, Python, Java, R, pathogen host interaction, Molecular Biology
Tools: Copasi, libRoadrunner, Python, R, semantic web
I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model. I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation ...
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, de.NBI-SysBio, Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, EnzymeML, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, MS_DILI, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COMBINE Multicellular Modelling, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, NMTrypI - New Medicines for Trypanosomatidic Infections, ModeleXchange initiative, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, BioCreative VII, SDBV ephemeral data exchanges, The BeeProject, SDBV/HITS
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

I am group leader of the SDBV (Scientific Databases and Visualisation) group at the HITS gGmbH, the Heidelberg Institute for Theoretical Studies.
I am interested in finding data. Starting with my master's thesis I have always worked on how to store data in a way that you can find it, and how to make sense out of data that has been stored.
Within FAIRDOM I find interesting to help people to store their data in a way that they make sense even after years.
Projects: Kinetics on the move - Workshop 2016
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Expertise: computational structural biology
Tools: Molecular Dynamics, Data Management, Databases, Data Science, web development, Ruby on Rails, Python
Research associate at HITS, software developer
Projects: FAIRDOM
Institutions: ETH Zurich & Basel / The Scientific IT Services (SIS) division
Expertise: Software Engineering, Scientific Computing, Databases, Distributed Systems
Tools: High Performance Computing, Statistics, SQL, Java, Python
Head of Scientific IT Services and member of the ITS executive board at ETH Zurich. Project manager of SyBIT. Project partner of the FAIRDOM Initiative.
Projects: FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, FAIRDOM user meeting
Institutions: University of Zürich, ETH Zurich, Manchester Centre for Integrative Systems Biology, University of Manchester
Expertise: Bioinformatics, Proteomics, Genomics
Tools: Matlab, Microarray analysis, Data Management, Computational Systems Biology, Perl, Python
I hold a Medical Doctor Diploma (Lviv, Ukraine) with the specialization in General Medicine. After the graduation from the Post Graduate Program in Bioinformatics at the Seneca College/York University (Toronto, Canada), I successfully participated in the number of scientific projects conducted at the University of Toronto (Canada) and the Toronto East General Hospital (Canada).
I obtained the PhD in Bioinformatics at the Swiss Institute of Bioinformatics (Geneva, Switzerland). As a PhD student, ...
Projects: SysMetEx, Kinetics on the move - Workshop 2016
Institutions: Università della Svizzera Italiana
Expertise: ODE modelling of biological interaction network, Bioinformatics
Tools: Python, c++, Java, bash, standard bioinformatic tools
Projects: SysMO DB, Whole body modelling of glucose metabolism in malaria patients, Manchester Institute for Biotechnology, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting
Institutions: University of Manchester - Department of Computer Science, Manchester Centre for Integrative Systems Biology, University of Manchester

Interested in systems + synthetic biology, biotechnology, mountaineering, swimming, running, and the occasional cup of tea. Once diagnosed as an ENFP.
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Expertise: Bioinformatics, Data Management
I created this for all SysMo Modellers
http://www.semanticsbml.org/aym Annotate Your Model
There you can annotate your non SBML models with biological terms (MIRIAM annotations). As a cool extra you can view you model source code with inserted biological infomation.
Together with this http://www.semanticsbml.org/semanticSBML you can serach for similar BioModels. The similarity search is based on MIRIAM annotations that are attached to you model. AYM also allows you to create annotations without ...
Projects: Noisy-Strep
Institutions: University of Cologne
Expertise: Mathematical modelling, Statistical Physics
Tools: Python, Matlab, Mathematica, Stochastic models, stochastic methods, fortran
I am a phd student working on statistical physics and complex systems and applying concepts from these fields to biology.
Projects: BaCell-SysMO
Institutions: University of Goettingen
Expertise: Mathematical modelling
Tools: Bioinformatics, Computational and theoretical biology, Python, SubtiWiki
I'm a PhD student at the lab of Prof. Dr. Jörg Stülke. My main interest is to analyze the central metabolism of Bacillus subtilis using systems biology software. I have developed an algorithm to find short pathways connecting sets of metabolites and I'm also involved in SubtiWiki, the wiki for all genes of Bacillus subtilis (http://subtiwiki.uni-goettingen.de)
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Projects: KOSMOBAC
Institutions: University of Aberdeen
Physicist, working on the modelling side.