The FAIRDOMHub

9 items tagged with 'COBRA toolbox'.

People (9)

Kristaps Berzins

Projects: Rhodolive

Institutions: Latvia University of Agriculture

Expertise: Stoichiometric modelling

Tools: Copasi, COBRA toolbox, Matlab

Agris Pentjuss

Projects: LEANPROT, Rhodolive

Institutions: Latvia University of Agriculture

Roles: Postdoc

Expertise: Python, Systems Biology, Dynamic modelling, Mathematical modelling

Tools: COBRA toolbox, cobrapy toolbox, Python, SBML, Copasi, Computational Systems Biology

Nhung Pham

Projects: EmPowerPutida

Institutions: Wageningen University & Research

https://orcid.org/0000-0003-3091-3962

Roles: PhD Student

Expertise: Systems Biology, Mathematical modelling, Biotechnology, Synthetic Biology, Metabolic Engineering, metabolism, Metabolic Networks

Tools: Matlab, Computational Systems Biology, Flux balance analysis, COBRA toolbox

I'm currently a PhD student in Laboratory of Systems and Synthetic Biology in Wageningen University & Research. My project involves using genome scale metabolic modelling to understand and improve chemical production capacities of microorganism.

Aida Ayoubzadeh

Projects: FAIRDOM & LiSyM & de.NBI Data Structuring Training

Institutions: University of Rostock

Roles: Student

Expertise: Data Management, Data Integration

Tools: COBRA toolbox

Egils Stalidzans

Projects: LEANPROT, FAIRDOM user meeting, Rhodolive

Institutions: Latvia University of Agriculture, Institute of Microbiology and Biotechnology, University of Latvia

https://orcid.org/0000-0001-6063-0184

Roles: Vice Coordinator

Expertise: Kinetic modelling, optimization, Parameter estimation

Tools: Copasi, COBRA toolbox

Niklas Tenhaef

Projects: XyloCut

Institutions: Forschungszentrum Jülich

https://orcid.org/0000-0002-9375-4156

Roles: PhD Student

Expertise: Corynebacterium glutamicum, Systems Biology, Stoichiometric modelling, Automation, Bioreactor cultivation

Tools: Matlab, COBRA toolbox, Liquid handling systems, Automation

PhD student @ "Quantitative Microbial Phenotyping"
Institute of Bio- and Geosciences, IBG-1: Biotechnology
Forschungszentrum Jülich GmbH
52425 Jülich, Germany

Ali Salehzadeh-Yazdi

Projects: SYSTERACT, Kinetics on the move - Workshop 2016, BESTER, iRhythmics, GB-XMap: Assessing the risk of gut-brain cross-diseases Investigating the gut-brain-axis

Institutions: University of Rostock

https://orcid.org/0000-0002-1678-0051

Roles: Postdoc

Expertise: metabolic systems biology, Kinetic modelling, genome-scale modeling, Metabolic Networks, Metabolic Engineering, Computational Systems Biology

Tools: Cytoscape, Copasi, COBRA toolbox, R, Matlab, Data Integration

Eduard Kerkhoven

Projects: SilicoTryp, SYSTERACT, SynBio4Flav

Institutions: University of Glasgow, Chalmers University of Technology

https://orcid.org/0000-0002-3593-5792

Expertise: genome-scale modeling, Kinetic modelling, metabolism, Metabolomics, Metabolic Engineering, Transcriptomics, Microbiology, Data Integration

Tools: R, Matlab, COBRA toolbox, Copasi, RNAseq, Bioreactor experiments, Metabolomics, Dynamic modelling

Natalie Stanford

Interested in systems + synthetic biology, biotechnology, mountaineering, swimming, running, and the occasional cup of tea. Once diagnosed as an ENFP.