The FAIRDOMHub

8 items tagged with 'COBRA toolbox'.

People (8)

Agris Pentjuss

Projects: LEANPROT, Rhodolive

Institutions: Latvia University of Agriculture

Roles: Postdoc

Expertise: Python, Systems Biology, Dynamic modelling, Mathematical modelling

Tools: Python, SBML, constraint-based modeling, Copasi, Computational Systems Biology, COBRA toolbox, cobrapy toolbox

Nhung Pham

Projects: EmPowerPutida

Institutions: Wageningen University & Research

Roles: PhD Student

Expertise: Metabolic Engineering, metabolism, metabolic networks, Biotechnology, Synthetic Biology, Systems Biology, Mathematical modelling

Tools: Flux balance analysis, COBRA toolbox, Matlab, Computational Systems Biology

I'm currently a PhD student in Laboratory of Systems and Synthetic Biology in Wageningen University & Research. My project involves using genome scale metabolic modelling to understand and improve chemical production capacities of microorganism.

Aida Ayoubzadeh

Projects: FAIRDOM & LiSyM & de.NBI Data Structuring Training

Institutions: University of Rostock

Roles: Student

Expertise: Data Management, Data integration

Tools: COBRA toolbox

Egils Stalidzans

Projects: LEANPROT, FAIRDOM user meeting, Rhodolive

Institutions: Latvia University of Agriculture, Institute of Microbiology and Biotechnology, University of Latvia

https://orcid.org/0000-0001-6063-0184

Roles: Vice Coordinator

Expertise: Kinetic modelling, parameter estimation, optimization

Tools: Copasi, COBRA toolbox

Niklas Tenhaef

Projects: XyloCut

Institutions: Forschungszentrum Jülich

https://orcid.org/0000-0002-9375-4156

Roles: PhD Student

Expertise: Automation, Bioreactor cultivation, Corynebacterium glutamicum, Systems Biology, Stoichiometric modelling

Tools: Automation, Matlab, COBRA toolbox, Liquid handling systems

PhD student @ "Quantitative Microbial Phenotyping"
Institute of Bio- and Geosciences, IBG-1: Biotechnology
Forschungszentrum Jülich GmbH
52425 Jülich, Germany

Ali Salehzadeh-Yazdi

Projects: SYSTERACT, Kinetics on the move - Workshop 2016, BESTER, iRhythmics, GB-XMap: Assessing the risk of gut-brain cross-diseases Investigating the gut-brain-axis

Institutions: University of Rostock

https://orcid.org/0000-0002-1678-0051

Roles: Postdoc

Expertise: genome-scale modeling, metabolic systems biology, Kinetic modelling, metabolic networks

Tools: Matlab, Data integration, Cytoscape, Copasi, COBRA toolbox, R

Eduard Kerkhoven

Projects: SilicoTryp, SYSTERACT

Institutions: University of Glasgow, Chalmers University of Technology

https://orcid.org/0000-0002-3593-5792

Expertise: genome-scale modeling, Kinetic modelling, metabolism, Data integration, Metabolomics, Metabolic Engineering, Transcriptomics, Microbiology

Tools: COBRA toolbox, Copasi, RNAseq, Bioreactor experiments, Metabolomics, Dynamic modelling, R, Matlab

Natalie Stanford

Interested in systems + synthetic biology, biotechnology, mountaineering, swimming, running, and the occasional cup of tea. Once diagnosed as an ENFP.