The FAIRDOMHub

7 items tagged with 'Dynamic modelling'.

People (7)

Agris Pentjuss

Projects: LEANPROT, Rhodolive

Institutions: Latvia University of Agriculture

Disciplines: Not specified

Roles: Postdoc

Expertise: Python, Systems Biology, Dynamic modelling, Mathematical modelling

Tools: Python, SBML, constraint-based modeling, Copasi, Computational Systems Biology, COBRA toolbox, cobrapy toolbox

No description specified

Daniel Weindl

Projects: INCOME

Institutions: ICB Helmholtz Center Munich

orcid.org/0000-0001-9963-6057

Disciplines: Modeller, Bioinformatician

Roles: Postdoc

Expertise: Programming, Dynamic modelling, Biochemistry, Data integration, parameter estimation, Metabolomics

Tools: AMICI, PESTO, Python, c++, parameter estimation

No description specified

Padraig Gleeson

Projects: COMBINE Multicellular Modelling

Institutions: University College London (UCL)

orcid.org/0000-0001-5963-8576

Disciplines: Modeller

Roles: Not specified

Expertise: Dynamic modelling, Databases, Mathematical modelling, standards, Neuroscience, NeuroML

Tools: NeuroML, Java, SBML, Python

No description specified

Thomas Cokelaer

Projects: SAFE-Aqua

Institutions: Institut Pasteur

orcid.org/0000-0001-6286-1138

Disciplines: Bioinformatician, Modeller

Roles: Not specified

Expertise: Systems Biology, Bioinformatics, Data integration, Dynamic modelling, Genomics, Mathematical modelling, parameter estimation

Tools: Computational Systems Biology, Python, Molecular biology techniques (RNA/DNA/Protein)

No description specified

Ziva Ramsak

Projects: TID - Dynamics of tolerant potato-potato virus Y interaction

Institutions: National Institute of Biology

orcid.org/0000-0003-0913-2715

Disciplines: Modeller, Bioinformatician

Roles: Not specified

Expertise: Bioinformatics, Data integration, Data Management, Dynamic modelling, Systems Biology, Transcriptomics

Tools: Bioinformatics, Computational Systems Biology, Databases, Dynamic modelling, Microarray analysis, ODE, R

No description specified

Marco Nobile

Projects: COMBINE Multicellular Modelling

Institutions: Bioinformatics MIlan Bicocca (BIMIB) - Università degli Studi di Milano Bicocca

orcid.org/0000-0002-7692-7203

Disciplines: Not specified

Roles: Not specified

Expertise: c++, Simulation, Dynamic modelling, dynamics and control of biological networks, Image analysis, parameter estimation, Python, SBML, Systems Biology, reverse engineering

Tools: CUDA, gpgpu computing, evolutionary computation, swarm intelligence

No description specified

Niels Zondervan

Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, WURSynBio

Institutions: Wageningen University & Research

orcid.org/0000-0001-7049-5334

Disciplines: Bioinformatician, Modeller

Roles: PhD Student

Expertise: Molecular Biology, Dynamic modelling, Python, Java, R, pathogen host interaction, Bioinformatics, Systems Biology, Agent-based modelling

Tools: Copasi, libRoadrunner, Python, R, semantic web

I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model.
I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation
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