Systems Biology Amsterdam

This is research programme towards the production of a collection of Chapters for a book on thermodynamics, kinetics and systems biology that is being written by Hans V. Westerhoff. This book will be a successor to 'Thermodynamics and control of biological free-energy transduction, Elsevier, Amsterdam (1987) by Westerhoff, H.V. & Van Dam, K.

This is the home programme for the Infrastructure Systems Biology @ NL activity of assisting clients with systems biology

Tables of standard chemical potentials of compounds of biological interest. The standard chemical potentials (molar Gibbs energies of formation from the chemical elements) were collected from various literature resources. Then Legendre transformations a la Alberty et al 2011 were done with respect to protons, Mg2+, water, and also Legendre-like transformations for phosphate, sulfate, bicarbonate and ammonium. All together this resulted in the new 'standard metabolic potentials', which should be ...

Transcription bursting and stochastics

Old versions of files that cannot be deleted because they have been published.

Four ppt lecture files that are part of a UvA course on 'How to design an alien'. They correspond to four lectures given by Hans V. Westerhoff, September - October 2021