This is the home programme for the Infrastructure Systems Biology @ NL activity of assisting clients with systems biology
Web page: https://isbe.nl
Funding details:At present this is an unfunded project, which in practice means that the Universities of the participating PIs contribute in kind.
Related items
Projects: Xenophiles Systems Biology
Institutions: VU University Amsterdam
Ph D student of Hans Westerhoff at VU working on Xeonomicrobiology
Projects: Xenophiles Systems Biology
Institutions: VU University Amsterdam
Projects: Xenophiles Systems Biology
Institutions: VU University Amsterdam
Professor at VU
Projects: Xenophiles Systems Biology
Institutions: University of Amsterdam
Professor of Astrophysics at the University of Amsterdam
Projects: SulfoSys, FAIRDOM user meeting, Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW), Make Me My Model, Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW), Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW), Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW), Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW), Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW), Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW), Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective), Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective), Training Hunfeld, EraCoBiotech 2 nd call proposal preparation, ROS detailed model for MSB manucript, Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation
Institutions: University of Amsterdam, VU University Amsterdam, Infrastructure Systems Biology Europe, University of Luxembourg, Luxembourg Centre for Systems Biomedicine (LCSB)
I have modelling expertise in precise kinetic models of metabolism and signal transduction; metabolic control analysis, hierarchical regulation analysis, non-equilibrium dynamics, statistical mechanics, enzyme kinetics, flux balance analysis. Energy and carbohydrate metabolism in Archaea, Bacteria and human; ammonium assimilation in Bacteria; differential network-based drug design; cancer metabolic rewiring; cell cycle; genome wide metabolic map and inborn errors of metabolism; epigenetics.
Projects: Xenophiles Systems Biology
Institutions: University of Amsterdam
Projects: Xenophiles Systems Biology
Institutions: University of Amsterdam
Professor of microbial systems ecology at UvA Committee member PhD thesis Joost Aerts
Projects: Xenophiles Systems Biology
Institutions: VU University Amsterdam
Committee member Ph D thesis Joost Aerts
Projects: Xenophiles Systems Biology
Institutions: Wageningen University & Research
Professor at WUR Member of Doctorate Committee Joost Aerts
Projects: Xenophiles Systems Biology
Institutions: Utrecht University
Projects: Xenophiles Systems Biology
Institutions: VU University Amsterdam
Professor in Planetary Evolution, Department of Earth Sciences, VU Amsterdam Member of Doctorate Committee PhD thesis Joost W Aerts
Projects: SysMO-LAB, MOSES, PSYSMO, SulfoSys, SulfoSys - Biotec, EraCoBiotech 2 nd call proposal preparation, Make Me My Model, Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, Xenophiles Systems Biology, Thermodynamics, Non equilibrium thermodynamics, Book on Thermodynamics, and kinetics, Teaching Alien Biology, Outdated material, Fusion-fission-mitophagy, Stochastics and bursting
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, VU University Amsterdam, University of Amsterdam, Systems Biology Amsterdam
https://orcid.org/0000-0002-0443-6114Systems Biologist at University of Amsterdam, Free University Amsterdam, University of Manchester, Infrastructure Systems Biology.NL (ISBE.NL), Systems Biology Amsterdam.
This is a project servicing Anna Maria Colangelo of UNIMIB to make models for neural differentiation and the effects of NGF addition and NGF withdrawal
Programme: ISBE.NL service programme
Public web page: Not specified
Organisms: Not specified
Most systems biology deals with Life as we know it on this planet (Earth). This project will focus on how (nonsynthetic) Life may differ from mainstream Life. The ultimate focus thereby rests on extraterrestrial Life, but for lack of definitive evidence of this, the project studies Life found under conditions that may be similar to extraterrestrial conditions enabling Life. The focus is herewith on the systems biology in remote environments on Earth. The project deals both with the systems cell ...
Programme: ISBE.NL service programme
Public web page: http://isbe.nl/
Start date: 8th Apr 2021
End date: 8th Apr 2035
Organisms: Not specified
Systems Biology as we know it is mostly terrestrial, i.e. it deals with mainstream Life on planet Earth. There are two exceptions. One is synthetic systems biology that designs other types of Life. The other exception studies the systems that may exist on other planets, or that exists at remote locations on planet Earth. Xenosystems Biology refers to the latter exception. At present this runs projects that deal with Life as found at remote locations on Earth, which are held representative of other ...
Programme: ISBE.NL service programme
Public web page: http://isbe.nl/
Start date: 8th Apr 2021
End date: 8th Apr 2031
Organisms: Not specified
Old versions of files that cannot be deleted because they have been published.
Programme: ISBE.NL service programme
Public web page: Not specified
Organisms: Not specified
Four ppt lecture files that are part of a UvA course on 'How to design an alien'. They correspond to four lectures given by Hans V. Westerhoff, September - October 2021
Programme: ISBE.NL service programme
Public web page: Not specified
Organisms: Not specified
1 file with legends 4 files with figures 2 files with tables
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
PhD thesis research by Joost W Aerts under supervision of Hans V. Westerhoff, Rob J van Spanning and Pascale Ehrenfreund
In this folder one has the: thesis summary a pdf of the thesis supplemental material per chapter, for chapters 3, 4, 6, and 7
Creators: Hans V. Westerhoff, Joost Aerts
Submitter: Hans V. Westerhoff
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Summary of the PhD thesis by Joost W. Aerts Under the auspices of Rob J. van Spanning, Pascale Ehrenfreund and Hans V. Westerhoff
Creators: Hans V. Westerhoff, Joost Aerts, Pascale Ehrenfreund
Submitter: Hans V. Westerhoff
Investigations: No Investigations
Studies: No Studies
Assays: No Assays