COVID-19 related studies and tools in Germany
OverviewThis project bundles information about COVID-19 related studies and tools in Germany. It intends to provide an information hub for the different initiatives, their aims, their processes, standards and study protocols, as well as their available data and metadata.
It is initiated by the German National Research Data Infrastructure for Personal Health Data (nfdi4health), a consortium that plans to establish a concept for a federated research data infrastructure for personal health data in Germany.
Main objectives of NFDI4Health are:
(1) the implementation of a federated health data infrastructure in Germany for searching and accessing health care data and health databases,
(2) to enhance data sharing and data linkage of personal health data in compliance with privacy regulations and ethics principles,
(3) to enable the development and deployment of new consent management mechanisms and augmented data access services, and
(4) to foster data sharing and cooperation between clinical research, epidemiological and public health communities.
Further information sites on COVID-19:
- https://www.zbmed.de/covid-19/uebersicht/
- https://gitlab.gwdg.de/medinfpub/medicalinformatics-covid19/
- https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/nCoV_node.html
- https://fairsharing.org/collection/COVID19Resources
- https://coronavirus.jhu.edu/
Programme: nfdi4health - German National Research Data Infrastructure for Personal Health Data
SEEK ID: https://fairdomhub.org/projects/191
Public web page: https://www.nfdi4health.de/index.php/de/task-force-covid-19/
Organisms: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
FAIRDOM PALs: No PALs for this Project
Project created: 2nd Apr 2020
Related items
Projects: WG Infrastructure for Translational Research, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM user meeting, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: University Medical Center Göttingen
Projects: FAIRDOM, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, MS_DILI, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM Community Workers, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
https://orcid.org/0000-0002-8683-7084
Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and
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Projects: FAIRDOM, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, LiSyM Core Infrastructure and Management (LiSyM-PD)
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Projects: GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: University Medical Center Göttingen
https://orcid.org/0000-0002-9895-2469
Projects: GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: University of Leipzig - Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
https://orcid.org/0000-0002-2344-0426
Projects: COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data
Institutions: University of Leipzig - Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
https://orcid.org/0000-0002-9256-7543
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, de.NBI-SysBio, Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, EnzymeML, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, MS_DILI, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", COMBINE Multicellular Modelling, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, NMTrypI - New Medicines for Trypanosomatidic Infections
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
https://orcid.org/0000-0002-4980-3512
I am group leader of the SDBV (Scientific Databases and Visualisation) group at the HITS gGmbH, the Heidelberg Institute for Theoretical Studies.
I am interested in finding data. Starting with my master's thesis I have always worked on how to store data in a way that you can find it, and how to make sense out of data that has been stored.
Within FAIRDOM I find interesting to help people to store their data in a way that they make sense even after years.
Country: 
Germany
City: Berlin
Web page: https://www.bihealth.org/en/research/core-facilities/interoperability/
Consortium website:
https://covidclinical.net/
Slack:
https://c19i2b2.slack.com/
Owner: Nils Gehlenborg (nils@hms.harvard.edu)
i2b2 tranSMART Foundation Call to Action:
https://transmartfoundation.org/covid-19-call-to-action/
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Die Charité – Universitätsmedizin Berlin betreibt gemeinsam mit dem Berlin Institute of Health
Clinical Study Center (BIH-CSC) eine zentrale Registerstudie ("Pa-COVID-19") und Phänotypisierungs-
plattform für alle an der Charité behandelten Patienten mit COVID-19.
Pa-COVID-19 dient der harmonisierten und standardisierten klinischen und molekularen
Phänotypisierung von COVID-19 Patienten. Übergeordnetes Ziel ist die schnelle und umfassende
Charakterisierung von COVID-19 zur Identifikation von
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Collection of cross-links to other sites that gather COVID-19 information
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Person responsible: Matthias Löbe
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Eine diagnostische Studie der Stufe 1 zur Entwicklung des SARS-CoV-2-ELISA. Ziel der Studie ist die Bestimmung von Sensitivität und Spezifität des Tests bei Probanden mit bekannter Erkrankung und bei Kontrollpersonen.
https://www.drks.de/drks_web/navigate.do?navigationId=trial.HTML&TRIAL_ID=DRKS00021166
Person responsible: Matthias Löbe
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Submitter: Theresa Bender
Assay type: Experimental Assay Type
Technology type: Technology Type
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Submitter: Theresa Bender
Assay type: Experimental Assay Type
Technology type: Technology Type
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Submitter: Theresa Bender
Assay type: Experimental Assay Type
Technology type: Technology Type
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Submitter: Matthias Löbe
Assay type: Experimental Assay Type
Technology type: Clinical Document
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Submitter: Harald Kusch
Assay type: Experimental Assay Type
Technology type: Technology Type
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First selection of LOINC Codes for data extraction
Creators: Theresa Bender, Christian Bauer
Submitter: Theresa Bender
Instructions and database scripts for extracting COVID-19 related data from i2b2
Creators: Theresa Bender, Christian Bauer
Submitter: Theresa Bender
Owner: Nils Gehlenborg (nils@hms.harvard.edu)
Creators: Theresa Bender, Christian Bauer
Submitter: Theresa Bender
Crosslinl (URL) to Gitlab info site on COVID-19 (University Medical Center Göttingen, Department of Medical Informatics)
Creators: Harald Kusch, Theresa Bender, Christian Bauer
Submitter: Harald Kusch
Abstract (Expand)
Authors: Julian Sass, Alexander Bartschke, Moritz Lehne, Andrea Essenwanger, Eugenia Rinaldi, Stefanie Rudolph, Kai Uwe Heitmann, Joerg Janne Vehreschild, Christof von Kalle, Sylvia Thun
Date Published: 29th Jul 2020
Publication Type: Journal
Abstract
Authors: Zichen Wang, Amanda B Zheutlin, Yu-Han Kao, Kristin L Ayers, Susan J Gross, Patricia Kovatch, Sharon Nirenberg, Alexander W Charney, Girish N Nadkarni, Paul F O'Reilly, Allan C Just, Carol R Horowitz, Glenn Martin, Andrea D Branch, Benjamin S Glicksberg, Dennis S Charney, David L Reich, William K Oh, Eric E Schadt, Rong Chen, Li Li
Date Published: 4th May 2020
Publication Type: Misc
Abstract (Expand)
Authors: K. Wolstencroft, O. Krebs, J. L. Snoep, N. J. Stanford, F. Bacall, M. Golebiewski, R. Kuzyakiv, Q. Nguyen, S. Owen, S. Soiland-Reyes, J. Straszewski, D. D. van Niekerk, A. R. Williams, L. Malmstrom, B. Rinn, W. Muller, C. Goble
Date Published: 4th Jan 2017
Publication Type: Journal
Abstract (Expand)
Authors: G. Wichmann, M. Rosolowski, K. Krohn, M. Kreuz, A. Boehm, A. Reiche, U. Scharrer, D. Halama, J. Bertolini, U. Bauer, D. Holzinger, M. Pawlita, J. Hess, C. Engel, D. Hasenclever, M. Scholz, P. Ahnert, H. Kirsten, A. Hemprich, C. Wittekind, O. Herbarth, F. Horn, A. Dietz, M. Loeffler
Date Published: 15th Dec 2015
Publication Type: Journal
Creator: Martin Golebiewski
Submitter: Martin Golebiewski
The Research Data Alliance (RDA) is a volunteer community of over 10,500 professionals from 145 countries across the globe. In less than two months, the community responded to an urgent call for action and defined much needed, comprehensive recommendations and guidelines for data sharing under the present COVID-19 circumstances.
Creators: Martin Golebiewski, see full list of members of the RDA COVID-19 working group: https://www.rd-alliance.org/node/68704/members
Submitter: Martin Golebiewski
DownloadThis is the fifth and final draft of the Recommendations and Guidelines from the RDA COVID-19 working group, and is open for public comment until 8th of June 2020. Following the open period, feedback will be considered and then the WG will seek endorsement of the document from the RDA governance bodies prior to final publication.
Creators: Martin Golebiewski, see full list of members of the RDA COVID-19 working group: https://www.rd-alliance.org/node/68704/members
Submitter: Martin Golebiewski
Draft guidelines and recommendations; fourth release, 15 May 2020, version for public review
Creator: see full list of members of the RDA COVID-19 working group: https://www.rd-alliance.org/node/68704/members
Submitter: Martin Golebiewski
Creator: Matthias Löbe
Submitter: Matthias Löbe
Creator: Matthias Löbe
Submitter: Matthias Löbe
