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- Ulrike Wittig
SEEK ID: https://fairdomhub.org/people/599
Location:
Germany
Expertise: Biochemistry, Databases, Data Management, Curation



Project roles
Project administrator
- Kinetics on the move - Workshop 2016
- de.NBI-SysBio
- EnzymeML
- FAIRDOM Community Workers
- MIX-UP
- CEPLAS – Cluster of Excellence on Plant Sciences
- ERNEST Mapping Group Pilot Study
- NMTrypI - New Medicines for Trypanosomatidic Infections
- Standardization of enzyme-catalyzed reaction measurement
- Standardization of enzyme-catalyzed reaction modelling
- CoVIDD - Coronavirus interactions in drug discovery

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de.NBI-SysBio (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Kinetics on the move - Workshop 2016 (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Example use cases (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; SBEpo - Systems Biology of Erythropoietin (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM & LiSyM & de.NBI Data Structuring Training (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; EnzymeML (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik" (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; FAIRDOM Community Workers (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; MIX-UP (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; CEPLAS – Cluster of Excellence on Plant Sciences (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; COVID-19 Disease Map (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; ERNEST Mapping Group Pilot Study (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; NMTrypI - New Medicines for Trypanosomatidic Infections (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Standardization of enzyme-catalyzed reaction measurement (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; Standardization of enzyme-catalyzed reaction modelling (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; ModeleXchange initiative (Heidelberg Institute for Theoretical Studies (HITS gGmbH)) ; CoVIDD - Coronavirus interactions in drug discovery (Heidelberg Institute for Theoretical Studies (HITS gGmbH))
Related items
- Projects (18)
- Institutions (1)
- Investigations (2+2)
- Studies (0+4)
- Assays (0+5)
- Data files (7+4)
- Publications (26)
- Presentations (2+3)
- Events (0+1)
Programme: This Project is not associated with a Programme
Public web page: Not specified
Here we share resources and best practices to develop a disease map for COVID-19. The project is progressing as a broad community-driven effort. We aim to establish a knowledge repository on virus-host interaction mechanisms specific to the SARS-CoV-2. The COVID-19 Disease Map is an assembly of molecular interaction diagrams established based on literature evidence.
Programme: Disease Maps
Public web page: http://doi.org/10.17881/covid19-disease-map
FAIRDOM will establish a support and service network for European Systems Biology. We will serve projects in standardising, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable.
Organisms: Not specified
The main idea of MIX-UP (MIXed plastics biodegradation and UPcycling using microbial communities) is to showcase a novel approach for plastic recycling and therefore addresses one of the greatest challenges of our time: the establishment of a circular (bio)-economy for plastics. The continuing demand for plastic products, the lack of appropriate recycling and the ubiquitous pollution of the environment with plastic waste pose a global challenge.
An ambitious vision and considerable efforts are
...
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: https://www.mix-up.eu/
Organisms: Not specified
Collection of training material for SEEK/FAIRDOMHub
Programme: FAIRDOM
Public web page: Not specified
Organisms: Not specified
Programme: FAIR Biocatalysis
Public web page: Not specified
Organisms: Not specified
Programme: FAIR Biocatalysis
Public web page: Not specified
Organisms: Not specified
Programme: FAIR Biocatalysis
Public web page: Not specified
Organisms: Not specified
Programme: COMBINE (Computational Modeling in Biology Network)
Public web page: Not specified
Organisms: Not specified
Programme: ERNEST - European Research Network on Signal Transduction
Public web page: Not specified
Organisms: Not specified
The New Medicines for Trypanosomatidic Infections - NMTrypI project aimed at obtaining new candidate drugs against Trypanosomatidic infections with appropriate efficiency from the lead phase to the final preclinical phase that are more accessible to patients.
Programme: Drug development for neglected parasitic diseases
Public web page: https://fp7-nmtrypi.eu/
Start date: 1st Feb 2014
End date: 31st Jan 2017
Multi-level mathematical modeling of erythropoiesis for optimized expansion of erythroid progenitor cells and improved treatment regimes
Programme: e:Bio
Public web page: Not specified
Organisms: Homo sapiens, Mus musculus
SMART Plants for Tomorrow’s Needs
Plants enable life on Earth through the conversion of solar energy into chemical energy. Beginning with the Neolithic Revolution, the domestication of plants provided the basis for human population growth and, subsequently, the evolution of highly developed civilizations. However, the growing food demands imposed by an increasing population and the effects of anthropogenic climate change pose huge challenges for sustainable food production and ecosystem maintenance.
...
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: https://www.ceplas.eu/en/home/
The GMDS project group bundles activities for health-related FAIR data infrastructures in the fields of biomedical research, clinical data management and medical informatics in Germany. It aims at providing a platform for information exchange about best practice for and implementation of FAIR data management in these fields and constructing a network of FAIR data managements providers in these fields. Through bridging between providers and potential users of such data management platforms within
...
Programme: German Association for Medical Informatics, Biometry and Epidemiology (GMDS)
Public web page: https://gmds.de/aktivitaeten/medizinische-informatik/projektgruppenseiten/faire-dateninfrastrukturen-fuer-die-biomedizinische-informatik/
Start date: 28th Feb 2019
End date: 27th Feb 2022
Organisms: Not specified
The Systems Biology Service Center of de.NBI (de.NBI-SysBio) provides bioinformatics support and a standards-based data management for systems biology projects, with focus on the provenance of experimental results and on the reproducibility of modeling experiments, as well as high-quality curated biochemical data to modelers and experimentalists.
The node concentrates on two tools for the data management in life sciences research: SEEK, a catalogue for storage, registration and exchange of data
...
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: Not specified
Organisms: Not specified
Programme: LiSyM - Systems Medicine of the Liver
Public web page: https://www.fairdomhub.org/events/96
Organisms: Not specified
Public showcase and collection of training material
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: http://www.denbi.de
Organisms: Not specified
The workshop focuses on the publication, curation, retrieval, and usage of kinetic data from the reaction kinetics database SABIO-RK and on the use of data in modeling. There will be experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: http://www.h-its.org/event/kinetics-on-the-move/
Snapshots: No snapshots
Studies: No Studies
Assays: No Assays
Creator: Ulrike Wittig
Submitter: Maja Rey
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Maja Rey, Ulrike Wittig
Submitter: Maja Rey
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Maja Rey, Ulrike Wittig
Submitter: Maja Rey
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Ulrike Wittig, Maja Rey
Submitter: Maja Rey
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Ulrike Wittig
Submitter: Ulrike Wittig
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Ulrike Wittig
Submitter: Ulrike Wittig
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Ulrike Wittig
Submitter: Ulrike Wittig
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: Dagmar Waltemath, Martin Golebiewski, Michael L Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M Keating, Matthias König, Olga Krebs, Rahuman S Malik-Sheriff, David Nickerson, Ernst Oberortner, Herbert M Sauro, Falk Schreiber, Lucian Smith, Melanie I Stefan, Ulrike Wittig, Chris J Myers
Date Published: 29th Jun 2020
Publication Type: Journal
Citation: Journal of Integrative Bioinformatics 0(0)
Abstract (Expand)
Authors: P. Linciano, G. Cullia, C. Borsari, M. Santucci, S. Ferrari, G. Witt, S. Gul, M. Kuzikov, B. Ellinger, N. Santarem, A. Cordeiro da Silva, P. Conti, M. L. Bolognesi, M. Roberti, F. Prati, F. Bartoccini, M. Retini, G. Piersanti, A. Cavalli, L. Goldoni, S. M. Bertozzi, F. Bertozzi, E. Brambilla, V. Rizzo, D. Piomelli, A. Pinto, T. Bandiera, M. P. Costi
Date Published: 1st Mar 2020
Publication Type: Journal
PubMed ID: 31982652
Citation: Eur J Med Chem. 2020 Mar 1;189:112047. doi: 10.1016/j.ejmech.2020.112047. Epub 2020 Jan 10.
Abstract (Expand)
Authors: N. J. Stanford, M. Scharm, P. D. Dobson, M. Golebiewski, M. Hucka, V. B. Kothamachu, D. Nickerson, S. Owen, J. Pahle, U. Wittig, D. Waltemath, C. Goble, P. Mendes, J. Snoep
Date Published: 12th Oct 2019
Publication Type: Journal
PubMed ID: 31602618
Citation: Methods Mol Biol. 2019;2049:285-314. doi: 10.1007/978-1-4939-9736-7_17.
Abstract (Expand)
Authors: D. Vanossi, M. Caselli, G. Pavesi, C. Borsari, P. Linciano, M. P. Costi, G. Ponterini
Date Published: 1st Sep 2019
Publication Type: Journal
PubMed ID: 30900698
Citation: Photochem Photobiol Sci. 2019 Sep 1;18(9):2270-2280. doi: 10.1039/c9pp00026g. Epub 2019 Mar 22.
Abstract
Authors: Venkatesan Jayaprakash, Daniele Castagnolo, Yusuf Özkay
Date Published: 15th Aug 2019
Publication Type: Book
Citation: CRC Press
Abstract (Expand)
Authors: G. Landi, P. Linciano, C. Borsari, C. P. Bertolacini, C. B. Moraes, A. Cordeiro-da-Silva, S. Gul, G. Witt, M. Kuzikov, M. P. Costi, C. Pozzi, S. Mangani
Date Published: 12th Jul 2019
Publication Type: Journal
PubMed ID: 31012301
Citation: ACS Infect Dis. 2019 Jul 12;5(7):1105-1114. doi: 10.1021/acsinfecdis.8b00358. Epub 2019 May 1.
Abstract (Expand)
Authors: P. Linciano, C. Pozzi, L. D. Iacono, F. di Pisa, G. Landi, A. Bonucci, S. Gul, M. Kuzikov, B. Ellinger, G. Witt, N. Santarem, C. Baptista, C. Franco, C. B. Moraes, W. Muller, U. Wittig, R. Luciani, A. Sesenna, A. Quotadamo, S. Ferrari, I. Pohner, A. Cordeiro-da-Silva, S. Mangani, L. Costantino, M. P. Costi
Date Published: 25th Apr 2019
Publication Type: Journal
PubMed ID: 30908048
Citation: J Med Chem. 2019 Apr 25;62(8):3989-4012. doi: 10.1021/acs.jmedchem.8b02021. Epub 2019 Apr 9.
Abstract (Expand)
Authors: C. Borsari, N. Santarem, S. Macedo, M. D. Jimenez-Anton, J. J. Torrado, A. I. Olias-Molero, M. J. Corral, A. Tait, S. Ferrari, L. Costantino, R. Luciani, G. Ponterini, S. Gul, M. Kuzikov, B. Ellinger, B. Behrens, J. Reinshagen, J. M. Alunda, A. Cordeiro-da-Silva, M. P. Costi
Date Published: 11th Apr 2019
Publication Type: Journal
PubMed ID: 30996791
Citation: ACS Med Chem Lett. 2019 Jan 29;10(4):528-533. doi: 10.1021/acsmedchemlett.8b00565. eCollection 2019 Apr 11.
Abstract (Expand)
Authors: C. B. Moraes, G. Witt, M. Kuzikov, B. Ellinger, T. Calogeropoulou, K. C. Prousis, S. Mangani, F. Di Pisa, G. Landi, L. D. Iacono, C. Pozzi, L. H. Freitas-Junior, B. Dos Santos Pascoalino, C. P. Bertolacini, B. Behrens, O. Keminer, J. Leu, M. Wolf, J. Reinshagen, A. Cordeiro-da-Silva, N. Santarem, A. Venturelli, S. Wrigley, D. Karunakaran, B. Kebede, I. Pohner, W. Muller, J. Panecka-Hofman, R. C. Wade, M. Fenske, J. Clos, J. M. Alunda, M. J. Corral, E. Uliassi, M. L. Bolognesi, P. Linciano, A. Quotadamo, S. Ferrari, M. Santucci, C. Borsari, M. P. Costi, S. Gul
Date Published: 21st Feb 2019
Publication Type: Journal
PubMed ID: 30784368
Citation: SLAS Discov. 2019 Mar;24(3):346-361. doi: 10.1177/2472555218823171.
Abstract (Expand)
Authors: M. D. Jimenez-Anton, E. Garcia-Calvo, C. Gutierrez, M. D. Escribano, N. Kayali, J. L. Luque-Garcia, A. I. Olias-Molero, M. J. Corral, M. P. Costi, J. J. Torrado, J. M. Alunda
Date Published: 30th Aug 2018
Publication Type: Journal
PubMed ID: 29883726
Citation: Eur J Pharm Sci. 2018 Aug 30;121:281-286. doi: 10.1016/j.ejps.2018.06.002. Epub 2018 Jun 5.
Abstract (Expand)
Authors: E. Uliassi, L. Piazzi, F. Belluti, A. Mazzanti, M. Kaiser, R. Brun, C. B. Moraes, L. H. Freitas-Junior, S. Gul, M. Kuzikov, B. Ellinger, C. Borsari, M. P. Costi, M. L. Bolognesi
Date Published: 6th Apr 2018
Publication Type: Journal
PubMed ID: 29451361
Citation: ChemMedChem. 2018 Apr 6;13(7):678-683. doi: 10.1002/cmdc.201700786. Epub 2018 Feb 16.
Abstract (Expand)
Authors: P. Linciano, C. B. Moraes, L. M. Alcantara, C. H. Franco, B. Pascoalino, L. H. Freitas-Junior, S. Macedo, N. Santarem, A. Cordeiro-da-Silva, S. Gul, G. Witt, M. Kuzikov, B. Ellinger, S. Ferrari, R. Luciani, A. Quotadamo, L. Costantino, M. P. Costi
Date Published: 25th Feb 2018
Publication Type: Journal
PubMed ID: 29407968
Citation: Eur J Med Chem. 2018 Feb 25;146:423-434. doi: 10.1016/j.ejmech.2018.01.043. Epub 2018 Jan 31.
Abstract (Expand)
Authors: U. Wittig, M. Rey, A. Weidemann, R. Kania, W. Muller
Date Published: 4th Jan 2018
Publication Type: Journal
PubMed ID: 29092055
Citation: Nucleic Acids Res. 2018 Jan 4;46(D1):D656-D660. doi: 10.1093/nar/gkx1065.
Abstract
Authors: Chiara Borsari, Antonio Quotadamo, Stefania Ferrari, Alberto Venturelli, Anabela Cordeiro-da-Silva, Nuno Santarem, Maria Paola Costi
Date Published: 2018
Publication Type: InBook
DOI: 10.1016/bs.armc.2018.08.002
Citation: Neglected Diseases: Extensive Space for Modern Drug Discovery 51:39-95,Elsevier
Abstract (Expand)
Authors: F. C. Herrmann, N. Sivakumar, J. Jose, M. P. Costi, C. Pozzi, T. J. Schmidt
Date Published: 6th Dec 2017
Publication Type: Journal
PubMed ID: 29211037
Citation: Molecules. 2017 Dec 6;22(12). pii: molecules22122166. doi: 10.3390/molecules22122166.
Abstract (Expand)
Authors: E. Uliassi, G. Fiorani, R. L. Krauth-Siegel, C. Bergamini, R. Fato, G. Bianchini, J. Carlos Menendez, M. T. Molina, E. Lopez-Montero, F. Falchi, A. Cavalli, S. Gul, M. Kuzikov, B. Ellinger, G. Witt, C. B. Moraes, L. H. Freitas-Junior, C. Borsari, M. P. Costi, M. L. Bolognesi
Date Published: 1st Dec 2017
Publication Type: Journal
PubMed ID: 29031061
Citation: Eur J Med Chem. 2017 Dec 1;141:138-148. doi: 10.1016/j.ejmech.2017.10.005. Epub 2017 Oct 3.
Abstract (Expand)
Authors: P. Linciano, A. Dawson, I. Pohner, D. M. Costa, M. S. Sa, A. Cordeiro-da-Silva, R. Luciani, S. Gul, G. Witt, B. Ellinger, M. Kuzikov, P. Gribbon, J. Reinshagen, M. Wolf, B. Behrens, V. Hannaert, P. A. M. Michels, E. Nerini, C. Pozzi, F. di Pisa, G. Landi, N. Santarem, S. Ferrari, P. Saxena, S. Lazzari, G. Cannazza, L. H. Freitas-Junior, C. B. Moraes, B. S. Pascoalino, L. M. Alcantara, C. P. Bertolacini, V. Fontana, U. Wittig, W. Muller, R. C. Wade, W. N. Hunter, S. Mangani, L. Costantino, M. P. Costi
Date Published: 30th Sep 2017
Publication Type: Journal
PubMed ID: 28983525
Citation: ACS Omega. 2017 Sep 30;2(9):5666-5683. doi: 10.1021/acsomega.7b00473. Epub 2017 Sep 11.
Abstract (Expand)
Authors: J. Panecka-Hofman, I. Pohner, F. Spyrakis, T. Zeppelin, F. Di Pisa, L. Dello Iacono, A. Bonucci, A. Quotadamo, A. Venturelli, S. Mangani, M. P. Costi, R. C. Wade
Date Published: 25th Sep 2017
Publication Type: Journal
PubMed ID: 28939533
Citation: Biochim Biophys Acta Gen Subj. 2017 Dec;1861(12):3215-3230. doi: 10.1016/j.bbagen.2017.09.012. Epub 2017 Sep 20.
Abstract (Expand)
Authors: R. J. Pierce, J. MacDougall, R. Leurs, M. P. Costi
Date Published: 23rd May 2017
Publication Type: Journal
PubMed ID: 28529130
Citation: Trends Parasitol. 2017 Aug;33(8):581-583. doi: 10.1016/j.pt.2017.04.007. Epub 2017 May 18.
Abstract (Expand)
Authors: F. Di Pisa, G. Landi, L. Dello Iacono, C. Pozzi, C. Borsari, S. Ferrari, M. Santucci, N. Santarem, A. Cordeiro-da-Silva, C. B. Moraes, L. M. Alcantara, V. Fontana, L. H. Freitas-Junior, S. Gul, M. Kuzikov, B. Behrens, I. Pohner, R. C. Wade, M. P. Costi, S. Mangani
Date Published: 8th Mar 2017
Publication Type: Journal
PubMed ID: 28282886
Citation: Molecules. 2017 Mar 8;22(3). pii: molecules22030426. doi: 10.3390/molecules22030426.