The nucleus of Prorocentrum cordatum
OverviewProgramme: Independent Projects
SEEK ID: https://fairdomhub.org/projects/300
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 24th Aug 2022
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Projects: EbN1 Systems Biology, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, The nucleus of Prorocentrum cordatum, Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum, Proteogneomics of Desulfobacteraceae members
Institutions: Carl von Ossietzky University of Oldenburg Institute for Chemistry and Biology of the Marine Environment (ICBM)
https://orcid.org/0000-0001-7253-3373
Projects that do not fall under current programmes.
Projects: Manchester Institute for Biotechnology, ICYSB 2015 - International Practical Course in Systems Biology, iRhythmics, INBioPharm, EmPowerPutida, Systo models, MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, Multiscale modelling of state transitions in the host-microbiome-brain network, Extremophiles metabolsim, NAD COMPARTMENTATION, Agro-ecological modelling, Bergen(Ziegler lab) project AF-NADase, NAMPT affinity, Stress granules, Modelling COVID-19 epidemics, Bio-crop, ORHIZON, Coastal Data, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, hybrid sequencing, HOST-PAR, BioCreative VII, Boolean modeling of Parkinson disease map, Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish, Selective Destruction in Ageing, Viral Metagenomic, Synthetic biology in Synechococcus for bioeconomy applications (SynEco), testproject, SDBV ephemeral data exchanges, Test project, The BeeProject, PHENET, LiceVault, EbN1 Systems Biology, UMRPégase, DeCipher, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, middle ear, datamgmt, Institut Pasteur's projects, The nucleus of Prorocentrum cordatum, qpcr, MRC-UNICORN, Test project for Sciender, qPCR, Artificial organelles_Pathogen digestion, Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", FAIR Functional Enrichment, PTPN11 mutagenesis, Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", iPlacenta- Placenta on a chip, Near Surface Wave-Coherent Measurements of Temperature and Humidity, A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training, Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea, Master-BIDS, Endometriosis, Vitis Data Crop, MESI-STRAT Review, Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply, ARAX: a web-based computational reasoning system for translational biomedicine, Adaptation of Salmonella enterica, I AM FRONTIER, ., PhD Nicotinic Acetylcholine Receptors, SFB1361 playground, Amaizing, Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum, icpm-kth, SDBV/HITS, sample project, TestingSeek, Genomic Medicine, Remodeling of cIV, Virtual Human Platform for Safety Assessment, PROMISEANG, URGI, Matsutake, UNDESIRABLE EFFECTS OF POST COVID-19 VACCINATION: A DESCRIPTIVE STUDY, WINTER 2022, Semantic Table Interpretation in Chemistry, MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact, the Supplementary materials for paper, ToxiGen - Reproductive toxicity and transgenerational effects of petroleum mixtures in fish, PhotoBoost, Measurement of Fisheries Provisioning Services and its Pressure to Support Sustainability of Fisheries in The Jatigede Reservoir, Indonesia, FIsh data on 2022 in the Jatigede Reservoir, ImmPort - data sharing, MESI-Review 2024, REWIRED: comparative RNA-seq and ATAC-seq in six salmonids and six outgroup telest fishes, REWIRED, Data Repository, APPN Test Project, Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation, BIDS, BioRECIPE representation format, UMass Chan BioImage DMS Core_FAIR Metadata Templates, Function, control and engineering of microbial methylotrophy, Pectobacterium pangenome, New Optical Coherence Tomography Biomarkers Identified with Deep Learning for Risk Stratification of Patients with Age-related Macular Degeneration, Virulence-related genes expression in planktonic mixed cultures of Candida albicans and non-albicans Candida species, Screening of Secondary Plant Metabolites on Antihelmintic Activity in Ascaris scum, Munich Cluster for Systems Neurology, Test project May 2024, Biospecimen Collection Protocol, Winter Wheat (Triticum aestivum L.) Grain Yield, Quality, and Net Photosynthesis When Grown Under Semi-Transparent Cadmium Telluride Photovoltaic Modules Near Maturity, Benefit for All FAIR Data, Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models, DPL, Glycogen Metabolism in bacteria, ILS Ceramide Ring Trial, Project Test, DeepCurate, Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae, Cancer Systems Biology Consortium (CSBC), Biochemical characterization of the feedforward loop between CDK1 and FOXM1 in epidermal stem cells, Drug Discovery and Biotechnology Standard Operating Procedures, EDITH (Ecosystem Digital Twins in Health) test project, Fluid flow project, Smart Garden Watering System, The role of different fatty acids, AQUACIRCLE
Web page: Not specified
Submitter: Lars Wöhlbrand
Investigation: 1 hidden item
Assays: Additional data related to microscopic investigations, Additional data related to proteomic investigations, Cellular and nuclear fractions of P. cordatum analyzed by GeLC iontrap M..., Cellular and nuclear fractions of P. cordatum analyzed by timsTOF MS/MS
Submitter: Lars Wöhlbrand
Assay type: Protein Expression Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: 1 hidden item
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Ion Mobility Spectrometry Mass Spectrometry
Investigation: 1 hidden item
Submitter: Jana Kalvelage
Assay type: Organism or Strain Characteristics
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Jana Kalvelage
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Content:
- Compiled 15 columns annotation of P. cordatum (Dougan et al. 2022)
- Summary of predicted unknown proteins of P. cordatum
- Calculations of predicted unknown proteins of P. cordatum
Tab color: annotation, purple; unknowns, green
Creators: None
Submitter: Jana Kalvelage
Download- Calculations of predictions of all identified proteins of P. cordatum
- Calculations of fold-changes of all identified proteins (cell vs. nuclei fraction) of P. cordatum
- Calculations of predictions of proteins of unknown function of_ P. cordatum_
- Calculations of fold-changes of unknowns (cell vs. nuclei fraction) of P. cordatum
Tab color: all identified proteins, purple; unkowns, green
Creators: None
Submitter: Jana Kalvelage
Content:
- Nuclear protein fractions: NSP, NMP and NTP R1-R3 (Peptide counts)
- Summary nuclear proteins geLC
- Cellular protein fractions: CSP, CMP R1-R3 (Peptide counts)
- Summary cellular proteins geLC
- Summary nuclear protein fractions NSP R1-R3 (iBAQs)
- Summary cellular protein fractions CSP R1-R3 (iBAQs)
- 15 columns annotation
- Final summary of protein data
- Prediction results
- Annotation (biological processes and categories)
Tab color: raw data, green; summarized data, orange; final ...
Creators: None
Submitter: Jana Kalvelage
- Summary of functional categorization of all identified proteins of P. cordatum
- Calculations of general functions (Fig. 5, left panel)
- Calculations of nuclear functions (Fig. 5, right panel)
- Categories in separate sheets
Tab color: Summarized data, purple; calculations, organge; functional categories, green
Creators: None
Submitter: Jana Kalvelage
- Summary of nuclear proteins
- Separate sheets of nuclear processes (MBNP_Histones, DNA replication, DNA repair, RNA processing (rRNA and mRNA processing), transcription, import and export, ubiquitylation, proteasome, biogenesis ribosomes)
- Ribosomes (category translation)
Tab color: Summary, purple; nuclear processes, green; ribosomes, orange
Creators: None
Submitter: Jana Kalvelage
Creators: None
Submitter: Lars Wöhlbrand
Prepared (sub-)cellular fractions were separated by gradient SDS-PAGE and entire sample lanes cut into pieces prior to in-gel digest and nanoLC separation coulpled to iontrap MS/MS detection.
Creators: None
Submitter: Lars Wöhlbrand
Supplementary movie of the distribution of nuclear pores in the nuclear envelope of P. cordatum
Creators: None
Submitter: Jana Kalvelage
Movie of the chromosomal packing in the nucleus of P. cordatum MPEG format (mp4)
Creators: None
Submitter: Jana Kalvelage
- Amira raw data of nuclear structures of P. cordatum
- Volume calculations of nuclear structures of_ P. cordatum _
Creators: None
Submitter: Jana Kalvelage
- raw data tif-file, stacked image for 3D reconstruction of the nucleus of P. cordatum
Creators: None
Submitter: Jana Kalvelage
Summary of identified ribosomal proteins of P. cordatum.
Creators: None
Submitter: Jana Kalvelage
Summary table of identified pigment binding proteins with relative shares in % and calculations of total amount of pigment binding proteins in the different data sets.
Creators: None
Submitter: Jana Kalvelage
