Additional data related to proteomic investigations
SEEK ID: https://fairdomhub.org/assays/1975
Experimental assay
Projects: The nucleus of Prorocentrum cordatum
Investigation: Proteomic analyses of the nuclear fraction of P. cordatum
Study: Proteomic analyses of the nuclear fraction of P. cordatum
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms
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Created: 31st Aug 2022 at 09:10
Last updated: 1st Dec 2022 at 10:06
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Web page: Not specified
Programme: Independent Projects
Public web page: Not specified
Submitter: Lars Wöhlbrand
Studies: Proteomic analyses of the nuclear fraction of P. cordatum
Assays: Additional data related to microscopic investigations, Additional data related to proteomic investigations, Cellular and nuclear fractions of P. cordatum analyzed by GeLC iontrap M..., Cellular and nuclear fractions of P. cordatum analyzed by timsTOF MS/MS
Submitter: Lars Wöhlbrand
Investigation: Proteomic analyses of the nuclear fraction of P...
Assays: Additional data related to microscopic investigations, Additional data related to proteomic investigations, Cellular and nuclear fractions of P. cordatum analyzed by GeLC iontrap M..., Cellular and nuclear fractions of P. cordatum analyzed by timsTOF MS/MS
Content:
- Compiled 15 columns annotation of P. cordatum (Dougan et al. 2022)
- Summary of predicted unknown proteins of P. cordatum
- Calculations of predicted unknown proteins of P. cordatum
Tab color: annotation, purple; unknowns, green
- Calculations of predictions of all identified proteins of P. cordatum
- Calculations of fold-changes of all identified proteins (cell vs. nuclei fraction) of P. cordatum
- Calculations of predictions of proteins of unknown function of_ P. cordatum_
- Calculations of fold-changes of unknowns (cell vs. nuclei fraction) of P. cordatum
Tab color: all identified proteins, purple; unkowns, green
Content:
- Nuclear protein fractions: NSP, NMP and NTP R1-R3 (Peptide counts)
- Summary nuclear proteins geLC
- Cellular protein fractions: CSP, CMP R1-R3 (Peptide counts)
- Summary cellular proteins geLC
- Summary nuclear protein fractions NSP R1-R3 (iBAQs)
- Summary cellular protein fractions CSP R1-R3 (iBAQs)
- 15 columns annotation
- Final summary of protein data
- Prediction results
- Annotation (biological processes and categories)
Tab color: raw data, green; summarized data, orange; final ...
- Summary of functional categorization of all identified proteins of P. cordatum
- Calculations of general functions (Fig. 5, left panel)
- Calculations of nuclear functions (Fig. 5, right panel)
- Categories in separate sheets
Tab color: Summarized data, purple; calculations, organge; functional categories, green
- Summary of nuclear proteins
- Separate sheets of nuclear processes (MBNP_Histones, DNA replication, DNA repair, RNA processing (rRNA and mRNA processing), transcription, import and export, ubiquitylation, proteasome, biogenesis ribosomes)
- Ribosomes (category translation)
Tab color: Summary, purple; nuclear processes, green; ribosomes, orange
Summary of identified ribosomal proteins of P. cordatum.
Summary table of identified pigment binding proteins with relative shares in % and calculations of total amount of pigment binding proteins in the different data sets.
