SEEK ID: https://fairdomhub.org/people/2164
Location: Germany
ORCID: https://orcid.org/0000-0001-7253-3373
Joined: 21st Apr 2022
Expertise: Not specified
Tools: Not specified
Roles
Project administrator
- Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum
- The nucleus of Prorocentrum cordatum
- Proteogneomics of Desulfobacteraceae members
Programme administrator
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Related items
- Programmes (2)
- Projects (5)
- Institutions (1)
- Investigations (2+1)
- Studies (3)
- Assays (7)
- Data files (19)
- SOPs (2+1)
Projects: Proteogneomics of Desulfobacteraceae members
Web page: Not specified
Projects that do not fall under current programmes.
Projects: Manchester Institute for Biotechnology, ICYSB 2015 - International Practical Course in Systems Biology, iRhythmics, INBioPharm, EmPowerPutida, Systo models, MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, Multiscale modelling of state transitions in the host-microbiome-brain network, Extremophiles metabolsim, NAD COMPARTMENTATION, Agro-ecological modelling, Bergen(Ziegler lab) project AF-NADase, NAMPT affinity, Stress granules, Modelling COVID-19 epidemics, Bio-crop, ORHIZON, Coastal Data, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, hybrid sequencing, HOST-PAR, BioCreative VII, Boolean modeling of Parkinson disease map, Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish, Selective Destruction in Ageing, Viral Metagenomic, Synthetic biology in Synechococcus for bioeconomy applications (SynEco), testproject, SDBV ephemeral data exchanges, Test project, The BeeProject, PHENET, LiceVault, EbN1 Systems Biology, UMRPégase, DeCipher, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, middle ear, datamgmt, Institut Pasteur's projects, The nucleus of Prorocentrum cordatum, qpcr, MRC-UNICORN, Test project for Sciender, qPCR, Artificial organelles_Pathogen digestion, Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", FAIR Functional Enrichment, PTPN11 mutagenesis, Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", iPlacenta- Placenta on a chip, Near Surface Wave-Coherent Measurements of Temperature and Humidity, A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training, Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea, Master-BIDS, Endometriosis, Vitis Data Crop, MESI-STRAT Review, Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply, ARAX: a web-based computational reasoning system for translational biomedicine, Adaptation of Salmonella enterica, I AM FRONTIER, ., PhD Nicotinic Acetylcholine Receptors, SFB1361 playground, Amaizing, Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum, icpm-kth, SDBV/HITS, sample project, TestingSeek, Genomic Medicine, Remodeling of cIV, Virtual Human Platform for Safety Assessment, PROMISEANG, URGI, Matsutake, UNDESIRABLE EFFECTS OF POST COVID-19 VACCINATION: A DESCRIPTIVE STUDY, WINTER 2022, Semantic Table Interpretation in Chemistry, MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact, the Supplementary materials for paper, ToxiGen - Reproductive toxicity and transgenerational effects of petroleum mixtures in fish, PhotoBoost, Measurement of Fisheries Provisioning Services and its Pressure to Support Sustainability of Fisheries in The Jatigede Reservoir, Indonesia, FIsh data on 2022 in the Jatigede Reservoir, ImmPort - data sharing, MESI-Review 2024, REWIRED: comparative RNA-seq and ATAC-seq in six salmonids and six outgroup telest fishes, REWIRED, Data Repository, APPN Test Project, Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation, BIDS, BioRECIPE representation format, UMass Chan BioImage DMS Core_FAIR Metadata Templates, Function, control and engineering of microbial methylotrophy, Pectobacterium pangenome, New Optical Coherence Tomography Biomarkers Identified with Deep Learning for Risk Stratification of Patients with Age-related Macular Degeneration, Virulence-related genes expression in planktonic mixed cultures of Candida albicans and non-albicans Candida species, Screening of Secondary Plant Metabolites on Antihelmintic Activity in Ascaris scum, Munich Cluster for Systems Neurology, Test project May 2024, Biospecimen Collection Protocol, Winter Wheat (Triticum aestivum L.) Grain Yield, Quality, and Net Photosynthesis When Grown Under Semi-Transparent Cadmium Telluride Photovoltaic Modules Near Maturity, Benefit for All FAIR Data, Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models, DPL, Glycogen Metabolism in bacteria, ILS Ceramide Ring Trial, Project Test, DeepCurate, Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae, tets, Cancer Systems Biology Consortium (CSBC), Biochemical characterization of the feedforward loop between CDK1 and FOXM1 in epidermal stem cells, Drug Discovery and Biotechnology Standard Operating Procedures, EDITH (Ecosystem Digital Twins in Health) test project, Fluid flow project, Smart Garden Watering System, The role of different fatty acids, AQUACIRCLE
Web page: Not specified
Programme: Independent Project
Public web page: Not specified
Cell biological and proteogenomic study of the chloroplast of the marine, bloom-forming dinoflagellate P. cordatum
Programme: Independent Projects
Public web page: Not specified
Start date: 4th Jul 2023
End date: 31st Aug 2024
Organisms: Not specified
Programme: Independent Projects
Public web page: Not specified
Organisms: Not specified
Cells of P. cordatum adapted to growth at 20 °C and constant light:dark conditions were shifted to growth at 26 °C and 30 °C, respectively, with similar illumination conditions. During exponential and stationary growth, cells were collected for transcriptomic, proteomic and metabolomic analyses.
Programme: Independent Projects
Public web page: Not specified
Organisms: Prorocentrum cordatum
Programme: Independent Projects
Public web page: Not specified
Organisms: Aromatoleum aromaticum
The family of Desulfobacteraceae comprises mtabolically versatile, completely oxidizing, sulfate-reducing bacteria that play an important role in the global carbon- and sulfor-cycles, mainly in the marine realm. In this study, six different species of Desulfobacteraceae were studied by comparative proteogenomics, i.e. Desulfobacula toluolica Tol2, Desulfococcus multivorans 1be1, Desulfonema limicola, Desulfonema magnum, Desulfosarcina variabilis 3be13 and Desulfobacterium autotrophicum ...
Submitter: Lars Wöhlbrand
Studies: Heat stress response of Prorocentrum cordatum
Assays: Metabolite analyses, Proteomic analyses
Snapshots: Snapshot 1
Submitter: Lars Wöhlbrand
Investigation: Proteogenomic analyses of Desulfobacteraceae me...
Assays: Membrane protein-enriched fraction proteomics of Desulfobacteraceae members, Shotgun proteomics of Desulfobacteraceae members
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Investigation: Heat stress response of Prorcentrum cordatum
Assays: Metabolite analyses, Proteomic analyses
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Investigation: 1 hidden item
Assays: Additional data related to microscopic investigations, Additional data related to proteomic investigations, Cellular and nuclear fractions of P. cordatum analyzed by GeLC iontrap M..., Cellular and nuclear fractions of P. cordatum analyzed by timsTOF MS/MS
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Organisms: No organisms
SOPs: SOP – Protein preparation, nanoLC-MS/MS analyse...
Data files: Detailed peptide data for identified proteins, Protein identification data
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Heat stress response of Prorcentrum cordatum
Organisms: No organisms
SOPs: No SOPs
Data files: 2D LC MS/MS peptide analyses, Membrane protein enriched fraction, Shotgun proteomic data
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Heat stress response of Prorcentrum cordatum
Submitter: Lars Wöhlbrand
Assay type: Protein Expression Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: GeLC ESI iontrap MS-based protein identification
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Ion Mobility Spectrometry Mass Spectrometry
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: Shotgun proteomic data timsTOF MS/MS
Snapshots: No snapshots
The soluble protein fraction was subjected to shotgun proteomics (i..e. in-solution digest) applying nanoLC ESI-Iontrap MS/MS and only detections in at least two replicates per condition and bacterium were considered for subsequent analyses. Correspondingly peptide count data was compiled per condition and strain studied.
Submitter: Lars Wöhlbrand
Assay type: Protein Expression Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Proteogenomic analyses of Desulfobacteraceae me...
Organisms: Desulfobacula toluolica, Desulfococcus multivorans, Desulfonema limicola, Desulfonema magnum, Desulforapulum autotrophicum, Desulfosarcina variabilis
SOPs: No SOPs
Data files: Shotgun proteomics data of Desulfobacterium aut..., Shotgun proteomics data of Desulfobacula toluol..., Shotgun proteomics data of Desulfococcus multiv..., Shotgun proteomics data of Desulfonema limicola, Shotgun proteomics data of Desulfonema magnum, Shotgun proteomics data of Desulfosarcina varia...
Snapshots: No snapshots
Submitter: Lars Wöhlbrand
Assay type: Protein Expression Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Proteogenomic analyses of Desulfobacteraceae me...
Organisms: Desulfobacula toluolica, Desulfococcus multivorans, Desulfonema limicola, Desulfonema magnum, Desulforapulum autotrophicum, Desulfosarcina variabilis
SOPs: No SOPs
Data files: Membrane protein-enriched fraction proteomics o..., Membrane protein-enriched fraction proteomics o..., Membrane protein-enriched fraction proteomics o..., Membrane protein-enriched fraction proteomics o..., Membrane protein-enriched fraction proteomics o..., Membrane protein-enriched fraction proteomics o...
Snapshots: No snapshots
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Tryptic peptides of P. cordatum were separated by 2D SCX-/RP nanoLC coupled to ESI-Iontrap MS/MS.
Creators: None
Submitter: Lars Wöhlbrand
Investigations: Heat stress response of Prorcentrum cordatum
Studies: Heat stress response of Prorocentrum cordatum
Assays: Proteomic analyses
The membrane fraction of Prorcentrum cordatum was prepared and proteins solubilized using SDS. Subsequently, proteins were separated by SDS-PAGE, subjected to tryptic in-gel digest and nanoLC ESI-iontrap MS/MS.
Creators: None
Submitter: Lars Wöhlbrand
Investigations: Heat stress response of Prorcentrum cordatum
Studies: Heat stress response of Prorocentrum cordatum
Assays: Proteomic analyses
Creators: None
Submitter: Lars Wöhlbrand
Investigations: 1 hidden item
Prepared (sub-)cellular fractions were separated by gradient SDS-PAGE and entire sample lanes cut into pieces prior to in-gel digest and nanoLC separation coulpled to iontrap MS/MS detection.
Creators: None
Submitter: Lars Wöhlbrand
Investigations: 1 hidden item
Creators: None
Submitter: Lars Wöhlbrand
Investigations: Systems biology investigation of aromatic compo...
Studies: Experimental multi-OMICS
Assays: Proteomic data
Creators: None
Submitter: Lars Wöhlbrand
Investigations: Systems biology investigation of aromatic compo...
Studies: Experimental multi-OMICS
Assays: Proteomic data
Prorocentrum cordatum was subjected to whole cell shotgun analyses (in-solution digest) unsing nanoLC ESI-intrap MS/MS
Creators: None
Submitter: Lars Wöhlbrand
Investigations: Heat stress response of Prorcentrum cordatum
Studies: Heat stress response of Prorocentrum cordatum
Assays: Proteomic analyses
Detailed description of the methods applied for proteomic analyses of P. cordatum heat stress response
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Investigations: Systems biology investigation of aromatic compo...
Studies: Experimental multi-OMICS
Assays: Proteomic data