Experimental multi-OMICS
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Created: 20th Apr 2022 at 11:59
Last updated: 13th Oct 2022 at 07:29
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Projects: EbN1 Systems Biology
Institutions: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures
Projects that do not fall under current programmes.
Projects: Manchester Institute for Biotechnology, ICYSB 2015 - International Practical Course in Systems Biology, iRhythmics, INBioPharm, EmPowerPutida, Systo models, MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, Multiscale modelling of state transitions in the host-microbiome-brain network, Extremophiles metabolsim, NAD COMPARTMENTATION, Agro-ecological modelling, Bergen(Ziegler lab) project AF-NADase, NAMPT affinity, Stress granules, Modelling COVID-19 epidemics, Bio-crop, ORHIZON, Coastal Data, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, hybrid sequencing, HOST-PAR, BioCreative VII, Boolean modeling of Parkinson disease map, Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish, Selective Destruction in Ageing, Viral Metagenomic, Synthetic biology in Synechococcus for bioeconomy applications (SynEco), testproject, SDBV ephemeral data exchanges, Test project, The BeeProject, PHENET, LiceVault, EbN1 Systems Biology, UMRPégase, DeCipher, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, middle ear, datamgmt, Institut Pasteur's projects, The nucleus of Prorocentrum cordatum, qpcr, MRC-UNICORN, Test project for Sciender, qPCR, Artificial organelles_Pathogen digestion, Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", FAIR Functional Enrichment, PTPN11 mutagenesis, Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", iPlacenta- Placenta on a chip, Near Surface Wave-Coherent Measurements of Temperature and Humidity, A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training, Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea, Master-BIDS, Endometriosis, Vitis Data Crop, MESI-STRAT Review, Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply, ARAX: a web-based computational reasoning system for translational biomedicine, Adaptation of Salmonella enterica, I AM FRONTIER, ., PhD Nicotinic Acetylcholine Receptors, SFB1361 playground, Amaizing, Conspicuous chloroplast with LHC‒PSI/II‒megacomplex and diverse PBPs in the marine dinoflagellate Prorocentrum cordatum, icpm-kth, SDBV/HITS, sample project, TestingSeek, Genomic Medicine, Remodeling of cIV, Virtual Human Platform for Safety Assessment, PROMISEANG, URGI, Matsutake, UNDESIRABLE EFFECTS OF POST COVID-19 VACCINATION: A DESCRIPTIVE STUDY, WINTER 2022, Semantic Table Interpretation in Chemistry, MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact, the Supplementary materials for paper, ToxiGen - Reproductive toxicity and transgenerational effects of petroleum mixtures in fish, PhotoBoost, Measurement of Fisheries Provisioning Services and its Pressure to Support Sustainability of Fisheries in The Jatigede Reservoir, Indonesia, FIsh data on 2022 in the Jatigede Reservoir, ImmPort - data sharing, MESI-Review 2024, REWIRED: comparative RNA-seq and ATAC-seq in six salmonids and six outgroup telest fishes, REWIRED, Data Repository, APPN Test Project, Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation, BIDS, BioRECIPE representation format, UMass Chan BioImage DMS Core_FAIR Metadata Templates, Function, control and engineering of microbial methylotrophy, Pectobacterium pangenome
Web page: Not specified
Programme: Independent Projects
Public web page: Not specified
Members of the genus Aromatoleum are cosmopolitan in diverse habitats and utilize a broad range of recalcitrant organic molecules coupled to denitrification or O2-respiration. To gain a holistic understanding of the model organism A. aromaticum EbN1T, we here studied its catabolic network dynamics in response to 3-(4-hydroxyphenyl)propanoate, phenylalanine, 3-hydroxybenzoate, benzoate and acetate utilized under nitrate-reducing vs. oxic conditions. Multi-OMICS (transcriptome, proteome and metabolome) ...
Submitter: Meina Neumann-Schaal
Studies: Experimental multi-OMICS, Genome re-annotation, Metabolic Modelling
Assays: CoA LC/MS Data, Cultivation for multi-OMICS, EbN1 Genome re-annotation, Metabolic modeling of EbN1, Proteomic data, Scenario files for Metano metabolic modeling, Transcriptomic data, non-volatile metabolites GC/MS
Submitter: Sarah Kirstein
Assay type: Experimental Assay Type
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Patrick Becker
Assay type: Transcriptomics
Technology type: Rna-seq
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Harvest optical densites and methods of transcriptom, proteom and metabolom samples for all tested substrat conditions.
Submitter: Meina Neumann-Schaal
Assay type: Experimental Assay Type
Technology type: Cultivation experiment
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Meina Neumann-Schaal
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Creators: None
Submitter: Lars Wöhlbrand
Creators: None
Submitter: Lars Wöhlbrand
Creators: None
Submitter: Patrick Becker
Creators: Katrin Ripken, Sarah Kirstein
Submitter: Sarah Kirstein
Creator: Sarah Kirstein
Submitter: Sarah Kirstein
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Sarah Kirstein
Creator: Katrin Ripken
Submitter: Sarah Kirstein
Creators: Katrin Ripken, Esther Wenzel
Submitter: Sarah Kirstein
Creators: None
Submitter: Sarah Kirstein
Creators: None
Submitter: Sarah Kirstein
Creators: None
Submitter: Sarah Kirstein
Creators: Sarah Kirstein, Katrin Ripken
Submitter: Sarah Kirstein
Creator: Lars Wöhlbrand
Submitter: Lars Wöhlbrand
Creators: Sarah Kirstein, Katrin Ripken, Esther Wenzel
Submitter: Sarah Kirstein
Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein
Submitter: Sarah Kirstein
Creators: Katrin Ripken, Sarah Kirstein
Submitter: Sarah Kirstein
Creators: Katrin Ripken, Esther Wenzel, Sarah Kirstein
Submitter: Sarah Kirstein
Creators: Katrin Ripken, Sarah Kirstein
Submitter: Sarah Kirstein
Creators: Daniel Wünsch, Patrick Becker
Submitter: Daniel Wünsch
