Cultivation for multi-OMICS
Harvest optical densites and methods of transcriptom, proteom and metabolom samples for all tested substrat conditions.
SEEK ID: https://fairdomhub.org/assays/1782
Experimental assay
Projects: EbN1 Systems Biology
Investigation: Systems biology investigation of aromatic compound catabolism in facultative anaerobic Aromatoleum aromaticum EbN1T
Study: Experimental multi-OMICS
Assay position: 0
Assay type: Experimental Assay Type
Technology type: Cultivation experiment
Organisms: No organisms
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Created: 20th Apr 2022 at 13:02
Last updated: 13th Oct 2022 at 07:48
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Programme: Independent Projects
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Members of the genus Aromatoleum are cosmopolitan in diverse habitats and utilize a broad range of recalcitrant organic molecules coupled to denitrification or O2-respiration. To gain a holistic understanding of the model organism A. aromaticum EbN1T, we here studied its catabolic network dynamics in response to 3-(4-hydroxyphenyl)propanoate, phenylalanine, 3-hydroxybenzoate, benzoate and acetate utilized under nitrate-reducing vs. oxic conditions. Multi-OMICS (transcriptome, proteome and metabolome) ...
Submitter: Meina Neumann-Schaal
Studies: Experimental multi-OMICS, Genome re-annotation, Metabolic Modelling
Assays: CoA LC/MS Data, Cultivation for multi-OMICS, EbN1 Genome re-annotation, Metabolic modeling of EbN1, Proteomic data, Scenario files for Metano metabolic modeling, Transcriptomic data, non-volatile metabolites GC/MS
Submitter: Meina Neumann-Schaal
Investigation: Systems biology investigation of aromatic compo...
Assays: CoA LC/MS Data, Cultivation for multi-OMICS, Proteomic data, Transcriptomic data, non-volatile metabolites GC/MS
Creators: Daniel Wünsch, Patrick Becker
Submitter: Daniel Wünsch
