Proteogenomic analyses of Desulfobacteraceae members

The family of Desulfobacteraceae comprises mtabolically versatile, completely oxidizing, sulfate-reducing bacteria that play an important role in the global carbon- and sulfor-cycles, mainly in the marine realm. In this study, six different species of Desulfobacteraceae were studied by comparative proteogenomics, i.e. Desulfobacula toluolica Tol2, Desulfococcus multivorans 1be1, Desulfonema limicola, Desulfonema magnum, Desulfosarcina variabilis 3be13 and Desulfobacterium autotrophicum HRM2.

DOI: 10.15490/fairdomhub.1.investigation.666.1

Zenodo URL: None

Created at: 29th Oct 2024 at 12:46

Contents

Proteogenomic analyses of Desulofbacteraceae members

No description specified

Shotgun proteomics of Desulfobacteraceae members

The soluble protein fraction was subjected to shotgun proteomics (i..e. in-solution digest) applying nanoLC ESI-Iontrap MS/MS and only detections in at least two replicates per condition and bacterium were considered for subsequent analyses. Correspondingly peptide count data was compiled per condition and strain studied.

Shotgun proteomics data of Desulfobacula toluolica Tol2

No description specified

  • Db_toluolica_Soluble_fraction.xlsx

Shotgun proteomics data of Desulfococcus multivorans 1be1

No description specified

  • Dc_multivorans_Soluble_fraction.xlsx

Shotgun proteomics data of Desulfonema limicola

No description specified

  • Dn_limicola_Soluble_fraction.xlsx

Shotgun proteomics data of Desulfonema magnum

No description specified

  • Dn_magnum_Soluble_fraction.xlsx

Shotgun proteomics data of Desulfosarcina variabilis 3be13

No description specified

  • Ds_variabilis_Soluble_fraction.xlsx

Shotgun proteomics data of Desulfobacterium autotrophicum HRM2

No description specified

  • Dt_autotrophicum_Soluble_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfobacteraceae members

No description specified

Membrane protein-enriched fraction proteomics of Desulfobacula toluolica Tol2

No description specified

  • Db_toluolica_Membrane_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfococcus multivorans 1be1

No description specified

  • Dc_multivorans_Membrane_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfonema limicola

No description specified

  • Dn_limicola_Membrane_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfonema magnum

No description specified

  • Dn_magnum_Membrane_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfosarcina variabilis 3be13

No description specified

  • Ds_variabilis_Membrane_fraction.xlsx

Membrane protein-enriched fraction proteomics of Desulfobacterium autotrophicum HRM2

No description specified

  • Dt_autotrophicum_Membrane_fraction.xlsx
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Citation
Wöhlbrand, L. (2024). Proteogenomic analyses of Desulfobacteraceae members. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.INVESTIGATION.666.1
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Created: 29th Oct 2024 at 12:46

Last updated: 29th Oct 2024 at 12:46

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