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- Projects (1)
- Institutions (19)
- Investigations (0+6)
- Studies (1+26)
- Assays (3+44)
- Data files (7+55)
- SOPs (4+11)
- Publications (4)
- Presentations (2+30)
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Projects: CC-TOP
Institutions: Université Clermont Auvergne (UCA)
Projects: CC-TOP
Institutions: CSIC Barcelona - Consejo Superior de Investigaciones Científicas
Projects: CC-TOP
Institutions: University of Groningen
Projects: CC-TOP
Institutions: Johnson Matthey
Projects: TRALAMINOL, CC-TOP
Institutions: BASF
Projects: CC-TOP
Institutions: European Research Executive Agency
PO
ESR14
Projects: TRALAMINOL, CC-TOP
Institutions: PROZOMIX
Expertise: Enzyme Discovery, metagenomics, HT-Cloning, Enzyme Production, Assay Development
Tools: In silico Mining
Projects: TRALAMINOL, CC-TOP
Institutions: CSIC Barcelona - Consejo Superior de Investigaciones Científicas
Projects: CC-TOP
Institutions: Technische Universität Darmstadt
Projects: CC-TOP
Institutions: University of Goettingen
Expertise: biocatalysis, catalysis, Organic Synthesis
Projects: CC-TOP
Institutions: University of Goettingen
Projects: TRALAMINOL, CC-TOP
Institutions: Technische Universität Darmstadt
Projects: CC-TOP
Institutions: University of Zagreb
Projects: TRALAMINOL, CC-TOP
Institutions: Université Clermont Auvergne (UCA)
Projects: CC-TOP
Institutions: Autonomous University of Madrid
https://orcid.org/0000-0001-5740-5584Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, EraCoBiotech 2 nd call proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER, TRALAMINOL, Sustainable co-production, INDIE - Biotechnological production of sustainable indole, Extremophiles metabolsim, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation, NAD COMPARTMENTATION, HOTSOLUTE, Stress granules, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, AquaHealth (ERA-BlueBio), LiSyM Core Infrastructure and Management (LiSyM-PD), Early Metabolic Injury (LiSyM-EMI - Pillar I), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, CC-TOP, BioCreative VII, MESI-STRAT Review, SDBV/HITS, MESI-Review 2024
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology, University of Rostock, University of Innsbruck
https://orcid.org/0000-0003-3540-0402Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics, semantics, Curation, Ontology, Data Modelling
Tools: Cell and tissue culture, Databases, Chip-chip, BioMart, Protege, RightField, SEEK
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In **[SySMO-DB ...
Projects: CC-TOP
Institutions: University of Freiburg
As an Innovative Training Network (ITN) , our approach to bringing about innovation is via education. The 15 Early Stage Researchers that join our project will gain multidisciplinary and cutting-edge expertise from our hosting institutions and associated partners, which is required to manipulate biological catalysts for meeting tomorrow’s demanding challenges in sustainable production processes.
CC-TOP is focused on exploiting the potential benefits of C-C bond forming enzymes (“carboligases”) ...
Programme: EU Projects
Public web page: https://cc-top-itn.eu/
Start date: 1st Mar 2021
End date: 30th Mar 2024
Organisms: Not specified
In a well with a total volume of 250 µL, the following components are added: 219 µL of 0.1 M TEA buffer, pH 7.5 1 µL of L-LDH (550 U.mL-1) 10 µL of NADH (10 mg.mL-1) 20 µL of the sample to be assayed
The initial absorbance (Ainitial) was measured at 340 nm, followed by the introduction of the Li-HPA sample solution, whether diluted or not. After stabilization, the final absorbance (Afinal) was measured. The concentration of Li-HPA was determined using the equation: ...
Snapshots: No snapshots
Submitter: Andrea Rizzo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: Enzymatic reaction set-up
Data files: Kinetic of DERA-61 towards non-natural substrate, Screening of the activity of DERA-61 in differe..., Time course of the aldol addition of furfural a..., Variation of DERA-61 melting temperature in dif...
Snapshots: No snapshots
Submitter: Andrea Rizzo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: 3D structure of DERA-61, 3D structure of DERA-61, Phylogenetic tree of all the 48 metagenomic DERAs
Snapshots: No snapshots
A stock solution of BSA (Bovine serum Albumine) 1 mg/ml is made and from this solution different aliquots are picked in order to obtain different dilution solution.
- 25 µL from solution + 975 µL water to obtain 25 µg/ml
- 50 µL from solution + 950 µL of water to obtain 50 µg/ml
- 75 µL from solution + 925 µL water to obtain 75 µg/ml
- 100 µL from solution + 900 µL water to obtain 100 µg/ml
- 125 µL from solution + 825 µL water to obtain 125 µg/ml
- 150 µL from solution + 850 µL water to ...
Submitter: Giuseppe Arbia
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Time course of the aldol addition of furfural and acetone using DERA-61 in non-optimized conditions
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
3D structure of DERA-61 predicted by alphafold.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
3D structure of DERA-61 predicted by alphafold.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Phylogenetic tree of all the 48 metagenomic DERAs in this work, with data on the expression quality of each, and the activity towards the aldol addition of furfural/benzaldehyde against acetone/butanone/cyclobutanone.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Variation of DERA-61 melting temperature in different conditions of pH, buffer type and concentration of NaCl
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Kinetic of DERA-61 towards the aldol addition of furfural and acetone.
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Creator: Diletta Arceri
Submitter: Diletta Arceri
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: Optimization of DERA-61 reaction conditions and 1 hidden item
This guidlines has been developed by Rita Volkers from Wageningen University for IBISBA project, as example to use
Creators: Olga Krebs, Rita Volkers
Submitter: Olga Krebs
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
Abstract (Expand)
Authors: Mehmet Mervan Çakar, Nevena Milčić, Theofania Andreadaki, Simon Charnock, Wolf-Dieter Fessner, Zvjezdana Findrik Blažević
Date Published: 21st Aug 2024
Publication Type: Journal
DOI: 10.1007/s00253-024-13277-1
Citation: Çakar, M.M., Milčić, N., Andreadaki, T., Charnock, S., Fessner, W.-D., Findrik Blažević, Z., Kinetic characterization of two neuraminic acid synthases and evaluation of their application potential. Appl Microbiol Biotechnol 108, 446 (2024). https://doi.org/10.1007/s00253-024-13277-1
Abstract (Expand)
Authors: Andrea Rizzo, Maria Carmen Aranda, James Galman, Annette Alcasabas, Akash Pandya, Amin Bornadel, Bruna Costa, Helen C Hailes, John M Ward, Jack W.E. Jeffries, Beatriz Dominguez
Date Published: 2nd Jul 2024
Publication Type: Journal
Citation: ChemBioChem,e202400278
Abstract (Expand)
Editor:
Date Published: 30th May 2024
Publication Type: Journal
DOI: 10.1039/D4GC01373E
Citation:
Abstract
Date Published: 14th Dec 2022
Publication Type: Journal
Citation:
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Andrea Rizzo
Submitter: Andrea Rizzo
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster made for NextGenBiocat conference in Heraklion (Greece)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster made for NextGenBiocat conference in Heraklion (Greece)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster realized for BIOTRANS 2023 in La Rochelle (France)
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Poster for the CC-TOP organized workshop at UAM
Creators: Damiano Baroni, Gerrit J Poelarends
Submitter: Damiano Baroni
Investigations: No Investigations
Studies: No Studies
Assays: No Assays