SEEK ID: https://fairdomhub.org/people/847
Location:
Norway
ORCID:
https://orcid.org/0000-0002-2484-9047
Joined: 31st Jan 2017
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Investigations (0+1)
- Studies (3+5)
- Assays (3+10)
- Data files (3+11)
- Models (3)
- Publications (9)
- Sample types (6)
- Samples (0+64)
The goal of the dCod-project is to combine the competencies in environmental toxicology, biology, bioinformatics and mathematics across the traditional department boundaries, to create a deeper understanding of cods' adaptations and reactions to stressors in the environment. Building on the thoroughly studies and mapping of the cod genome at UiO and the long research traditions on cod at the Department of Biology at UiB, the dCod project will expand our knowledge with methods based on genomics; ...
Projects: Systems toxicology of Atlantic cod
Web page: http://dcod.no
Coastal zones and oceans constitute an essential fundament for Norway’s history as well as current economy, providing ecosystem services for fisheries, aquaculture, transport, tourism, and recreation. The petroleum activities in Norwegian waters have been crucial for Norway’s financial growth and in financing the Norwegian welfare state. As the pressure on the oceans continuously increases, both the petroleum industry and the seafood industries have acknowledged that awareness and actions are ...
Programme: dCod 1.0: decoding systems toxicology of cod
Public web page: http://www.uib.no/en/dcod
Organisms: Gadus morhua
Location: UiB Date: 8-20 June 2017 Compounds tested: WY-14,643 (PPAR alpha agonist), GW501516 (PPAR beta agonist) No. of test groups: 5 (Control 1: DMSO/saline/PEG, WY-14.643 High (40 mg/kg), WY-14.643 Low (4.0 mg/kg), GW501516 High (4.0 mg/kg), GW501516 Low (0.4 mg/kg)) No. of fish per group: 22
Aim: *To investigate effects on lipid metabolism in Atlantic cod ( Gadus morhua) mediated by peroxisome proliferator-activated receptors (Ppars) by in vivo exposure to two mammalian PPAR agonists.
Submitter: Marta Eide
Investigation: 1 hidden item
Assays: In vivo II - GW and WY Biometric data, Proteomics data, RNA sequencing, Targeted lipidomics, Untargeted lipidomics
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
To map genome wide transcriptome responses in Atlantic cod PCLS treated with BaP and EE2. See Yadetie et al., 2018.
Submitter: Fekadu Yadetie
Investigation: 1 hidden item
Snapshots: No snapshots
Snapshots: No snapshots
RNA-seq data for In vivo 7 samples. Only 32 RNA samples from liver of male fish sequenced. Illumina poly(A)-RNA sequencing at UiB GCF, as in Yadetie et al., 2018.
Submitter: Fekadu Yadetie
Assay type: RNA-seq
Technology type: Next generation sequencing
Investigation: 1 hidden item
Study: 1 hidden item
Submitter: Fekadu Yadetie
Assay type: RNA-seq
Technology type: Next generation sequencing
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: PCLS_BaP-EE2_RNAseq - analysis, PCLS_BaP-EE2_RNAseq - reads, RNA-seq metadata for BaP and EE2 treated PCLS s...
Snapshots: No snapshots
Submitter: Xiaokang Zhang
Biological problem addressed: Metabolic Network
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: Gadus morhua
Models: Draft metabolic reconstruction model of Atlanti..., Draft metabolic reconstruction model of Atlanti..., Draft metabolic reconstruction model of Atlanti...
SOPs: No SOPs
Data files: Draft metabolic reconstruction model of Atlanti..., Draft metabolic reconstruction model of Atlanti..., Draft metabolic reconstruction model of Atlanti..., Visualization of gap filling of subsystem "Meta...
Snapshots: Snapshot 1, Snapshot 2
Creator: Fekadu Yadetie
Submitter: Fekadu Yadetie
Investigations: 1 hidden item
Creator: Fekadu Yadetie
Submitter: Fekadu Yadetie
Investigations: 1 hidden item
Creator: Fekadu Yadetie
Submitter: Fekadu Yadetie
Investigations: 1 hidden item
This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090003.
[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415
Creators: Xiaokang Zhang, Eileen Marie Hanna, Marta Eide, Shirin Fallahi, Fekadu Yadetie, Anders Goksøyr, Inge Jonassen, Tomasz Furmanek; Daniel Craig Zielinski
Submitter: Xiaokang Zhang
Model type: Metabolic network
Model format: SBML
Environment: Matlab
This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090002.
[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415
Creators: Xiaokang Zhang, Eileen Marie Hanna, Marta Eide, Shirin Fallahi, Fekadu Yadetie, Anders Goksøyr, Inge Jonassen, Tomasz Furmanek; Daniel Craig Zielinski
Submitter: Xiaokang Zhang
Model type: Metabolic network
Model format: SBML
Environment: Matlab
This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090001.
[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415
Creators: Xiaokang Zhang, Eileen Marie Hanna, Marta Eide, Shirin Fallahi, Fekadu Yadetie, Anders Goksøyr, Inge Jonassen, Tomasz Furmanek; Daniel Craig Zielinski
Submitter: Xiaokang Zhang
Model type: Metabolic network
Model format: SBML
Environment: Matlab
Abstract (Expand)
Authors: Eileen Marie Hanna, Xiaokang Zhang, Marta Eide, Shirin Fallahi, Tomasz Furmanek, Fekadu Yadetie, Daniel Craig Zielinski, Anders Goksøyr, Inge Jonassen
Date Published: 26th Nov 2020
Publication Type: Journal
DOI: 10.3389/fmolb.2020.591406
Citation: Front. Mol. Biosci. 7,591406
Abstract (Expand)
Authors: Pål A. Olsvik, Anett Kristin Larsen, Marc H. G. Berntssen, Anders Goksøyr, Odd André Karlsen, Fekadu Yadetie, Monica Sanden, Torstein Kristensen
Date Published: 26th Sep 2019
Publication Type: Journal
Citation: Front. Genet. 10,794
Abstract (Expand)
Authors: E. A. Khan, L. B. Bertotto, K. Dale, R. Lille-Langoy, F. Yadetie, O. A. Karlsen, A. Goksoyr, D. Schlenk, A. Arukwe
Date Published: 18th Jun 2019
Publication Type: Not specified
PubMed ID: 31090407
Citation: Environ Sci Technol. 2019 Jun 18;53(12):7036-7044. doi: 10.1021/acs.est.9b00637. Epub 2019 May 29.
Abstract (Expand)
Authors: K. Dale, M. B. Muller, Z. Tairova, E. A. Khan, K. Hatlen, M. Grung, F. Yadetie, R. Lille-Langoy, N. Blaser, H. J. Skaug, J. L. Lyche, A. Arukwe, K. Hylland, O. A. Karlsen, A. Goksoyr
Date Published: 26th Feb 2019
Publication Type: Not specified
PubMed ID: 30803754
Citation: Mar Environ Res. 2019 Mar;145:39-51. doi: 10.1016/j.marenvres.2019.02.003. Epub 2019 Feb 11.
Abstract (Expand)
Authors: F. Yadetie, X. Zhang, E. M. Hanna, L. Aranguren-Abadia, M. Eide, N. Blaser, M. Brun, I. Jonassen, A. Goksoyr, O. A. Karlsen
Date Published: 22nd Jun 2018
Publication Type: Not specified
PubMed ID: 29929084
Citation: Aquat Toxicol. 2018 Aug;201:174-186. doi: 10.1016/j.aquatox.2018.06.003. Epub 2018 Jun 7.
Abstract (Expand)
Author: Fekadu Yadetie, Eystein Oveland, Anne Døskeland, Frode Berven Anders Goksøyr, Odd André Karlsen
Date Published: 1st Apr 2017
Publication Type: Not specified
DOI: 10.1016/j.aquatox.2017.01.014
Citation: Aquatic Toxicology 185 : 19
Abstract (Expand)
Authors: F. Yadetie, S. Bjorneklett, H. K. Garberg, E. Oveland, F. Berven, A. Goksoyr, O. A. Karlsen
Date Published: 9th Aug 2016
Publication Type: Not specified
PubMed ID: 27496535
Citation: BMC Genomics. 2016 Aug 5;17:554. doi: 10.1186/s12864-016-2864-2.
Abstract (Expand)
Authors: F. Yadetie, O. A. Karlsen, M. Eide, C. Hogstrand, A. Goksoyr
Date Published: 19th Jun 2014
Publication Type: Not specified
PubMed ID: 24939016
Citation: BMC Genomics. 2014 Jun 17;15:481. doi: 10.1186/1471-2164-15-481.
Abstract (Expand)
Authors: F. Yadetie, O. A. Karlsen, A. Lanzen, K. Berg, P. Olsvik, C. Hogstrand, A. Goksoyr
Date Published: 30th Oct 2012
Publication Type: Not specified
PubMed ID: 23103053
Citation: Aquat Toxicol. 2013 Jan 15;126:314-25. doi: 10.1016/j.aquatox.2012.09.013. Epub 2012 Oct 8.
Measurements of Gst and Cat enzyme activity in field studies such as Kollevåg.
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Gst activity nmol/min/mg (Real number) , Cat activity nmol/min/mg (Real number)
FASTQ Paired ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Library Origine ID (Registered Sample - Library preparation) *, FASTQ R1 (String) *, FASTQ R2 (String) *
Not specified
Library ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *
Not specified
Count ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Bam Origine ID (Registered Sample - BAM file) *
Not specified
Bam ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, FASTQ Paired Origine ID (Registered Sample - FASTQ Paired) *
Not specified
Sample ID (String) *, Sample name (String) , Date sampled (Date) , Treatment (String) , Fish# (sampling) (Integer) , Fish# (RNA-seq) (Integer) , Body wt in (g) (Integer) , Liver wt in (g) (Integer) , Sex (String) , Species (String) , Tissue (String)
Not specified