Projects: COVID-19 Disease Map
Institutions: The International Clinical Research Center of St. Anne's University Hospital Brno

Expertise: Epigenetics, Liver, Cancer research, Metabolomics, Transcriptomics, Proteomics, Lipids
Principal Investigator
International Clinical Research Center (FNUSA-ICRC)
Brno
Czech Republic
Projects: PoLiMeR - Polymers in the Liver: Metabolism and Regulation
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Roles: Postdoc
Expertise: metabolism, Liver, fatty acid, Metabolic Models
Tools: experimental tools, Modeling
This profile is created to handle PoLiMeR data only - mainly the materials from Anne-Claire M.F. Martines PhD thesis (temporary solution)
Projects: Kinetics on the move - Workshop 2016, Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), FAIRDOM user meeting, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: Charité University Medicine Berlin, Humboldt-Universität zu Berlin, Humboldt University Berlin

Roles: Project Coordinator
Expertise: Computational modelling, Metabolic Models, Kinetic modelling, Liver, Metabolic Networks, Computational Biology
Tools: SBML, SED-ML, ODE, roadrunner, tellurium, Cytoscape, jupyter notebooks
We are investigating liver metabolism and function with the help of computational models and methods.
Read more about the LiSyM junior group at: www.livermetabolism.com
Junior Group Leader
Dr. Matthias König
Institute for Theoretical Biology
Humboldt-University Berlin
Invalidenstraße 43, 10117 Berlin, Germany
phone +49 30 2093-8450
konigmatt@googlemail.com
The liver is the central metabolic organ of our body playing a crucial role in the clearance of drugs, xenobiotics and numerous metabolites
...
RNA-seq data for In vivo 7 samples. Only 32 RNA samples from liver of male fish sequenced. Illumina poly(A)-RNA sequencing at UiB GCF, as in Yadetie et al., 2018.
Submitter: Fekadu Yadetie
Assay type: RNA-seq
Technology type: Next generation sequencing
Snapshots: No snapshots
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: 3 hidden items
Abstract (Expand)
Authors: K. van Eunen, C. M. Volker-Touw, A. Gerding, A. Bleeker, J. C. Wolters, W. J. van Rijt, A. M. Martines, K. E. Niezen-Koning, R. M. Heiner, H. Permentier, A. K. Groen, D. J. Reijngoud, T. G. Derks, B. M. Bakker
Date Published: 7th Dec 2016
Publication Type: Journal
PubMed ID: 27927213
Citation: BMC Biol. 2016 Dec 7;14(1):107. doi: 10.1186/s12915-016-0327-5.
Abstract (Expand)
Authors: K. Meyer, O. Ostrenko, G. Bourantas, H. Morales-Navarrete, N. Porat-Shliom, F. Segovia-Miranda, H. Nonaka, A. Ghaemi, J. M. Verbavatz, L. Brusch, I. Sbalzarini, Y. Kalaidzidis, R. Weigert, M. Zerial
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 28330614
Citation: Cell Syst. 2017 Mar 22;4(3):277-290.e9. doi: 10.1016/j.cels.2017.02.008. Epub 2017 Mar 18.