Draft metabolic reconstruction model of Atlantic cod liver

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor3 and iHepatocyte2322

COBRA Matlab toolbox was used.

• draftModel_gadMor3_s3f.xml

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMorTrinity and iHepatocyte2322

gadMorTrinity can be found at: https://doi.org/10.6084/m9.figshare.13067354.v1

• draftModel_trinity_s3f.xml

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor1 and iHepatocyte2322

No description specified

• draftModel_gadMor1_s3f.xml

Visualization of gap filling of subsystem "Metabolism of xenobiotics by cytochrome P450"

The reactions existing in the auto-generated draft model are shown in blue, and the manually filled gaps are shown in green. Comparing our draft model with the same subsystem from model iHepatocytes2322, the missing reactions are highlighted in pink. The pink dots indicate the parent toxicants.

• map_P450_after_gapfilling.pdf

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor3 and iHepatocyte2322

This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090001.

[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415

• MODEL2010090001

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMorTrinity and iHepatocyte2322

This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090002.

[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415

• MODEL2010090002

Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor1 and iHepatocyte2322

This is an auto-generated model with COBRA Matlab toolbox. This model was deposited in BioModels [1] and assigned the identifier MODEL2010090003.

[1] Malik-Sheriff et al. BioModels — 15 years of sharing computational models in life science. Nucleic Acids Research. 2020 Jan, 48(D1):D407–415

• MODEL2010090003