Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways

Simulate Model on Copasi Simulate Model on JWS Download

First version of Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways. This model includes as a chassis , the Pseudomonas Putida GEM (iJN1411) . It includes the metabolic reconstruction of more than 500 flavonoids and more than 500 reactions related to the flavonoid biosynthesis.

SEEK ID: https://fairdomhub.org/models/725?version=8

7 items are associated with this Model:
  • iFLAV.xml (XML document - 3.49 MB) Download
  • modeloFR_2020.xml (XML document - 4.01 MB) Download
  • SynBio4Flav_flavonoids_GEM_v0.3.2.xml (XML document - 3.98 MB) Download
  • SynBio4Flav_flavonoids_GEM_v0.3.2.xml (XML document - 3.98 MB) Download
  • SynBio4Flav_flavonoids_GEM_v0.3.1.xml (XML document - 3.94 MB) Download
  • SynBio4Flav_flavonoids_GEM_v0.3.xml (XML document - 3.96 MB) Download
  • SynBio4Flav_flavonoids_GEM_v0.2.xml (XML document - 3.9 MB) Download

Organism: Pseudomonas putida

Model type: Metabolic network

Model format: SBML

Execution or visualisation environment: Matlab

Model image: No image specified

help Creators and Submitter
Creators
Additional credit

Álvaro Gargantilla Becerra

Submitter
License
Creative Commons Attribution Share Alike 4.0 International
Activity

Views: 2820   Downloads: 212   Runs: 0

Created: 7th May 2020 at 09:42

Last updated: 16th Oct 2023 at 10:41

help Attributions

None

Version History

Version 8 (latest) Created 16th Oct 2023 at 10:41 by David San León Granado

Add the iFLAV 1.0 version with 511 flavonoid biosynthesis

Version 7 Created 17th Dec 2020 at 13:50 by David San León Granado

Update with 30 new flavonoids

Compare
Powered by
 (v.1.16.0-pre)
About FAIRDOMHub | Funding and Programmes | Credits | Terms & Conditions | Imprint | Cookie preferences
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH