Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways
Simulate Model on Copasi
Simulate Model on JWSFirst version of Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways. This model includes as a chassis , the Pseudomonas Putida GEM (iJN1411) . It includes the metabolic reconstruction of more than 500 flavonoids and more than 500 reactions related to the flavonoid biosynthesis.
SEEK ID: https://fairdomhub.org/models/725?version=7
6 items are associated with this Model:-
modeloFR_2020.xml (XML document - 4.01 MB)
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SynBio4Flav_flavonoids_GEM_v0.3.2.xml (XML document - 3.98 MB)
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SynBio4Flav_flavonoids_GEM_v0.3.2.xml (XML document - 3.98 MB)
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SynBio4Flav_flavonoids_GEM_v0.3.1.xml (XML document - 3.94 MB)
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SynBio4Flav_flavonoids_GEM_v0.3.xml (XML document - 3.96 MB)
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SynBio4Flav_flavonoids_GEM_v0.2.xml (XML document - 3.9 MB)
Organism: Pseudomonas putida
Model type: Metabolic network
Model format: SBML
Execution or visualisation environment: Matlab
Model image: No image specified
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Creators and SubmitterCreators
Additional credit
Álvaro Gargantilla Becerra
Submitter
Views: 2823 Downloads: 212 Runs: 0
Created: 7th May 2020 at 09:42
Last updated: 16th Oct 2023 at 10:41
AttributionsNone
Version History
Version 8 (latest) Created 16th Oct 2023 at 10:41 by David San León Granado
Add the iFLAV 1.0 version with 511 flavonoid biosynthesis
Version 7 Created 17th Dec 2020 at 13:50 by David San León Granado
Update with 30 new flavonoids
Related items
https://orcid.org/0000-0002-4961-0833
Projects: SynBio4Flav
Web page: http://www.cnb.csic.es/index.php/en/research/research-departments/systems-biology
The main objective of SynBio4Flav is to go further in the standardization of high complexity synthetic biological parts, and to demonstrate the development of a standardized, and systematic platform for flavonoids production based on synthetic microbial consortia (SMCs).
Programme: Systems Biology Programme
Public web page: Not specified
