SEEK ID: https://fairdomhub.org/people/1369
Location:
Netherlands
ORCID:
https://orcid.org/0000-0002-9872-2102
Joined: 26th May 2019
Expertise: Not specified
Tools: Not specified
Related items
- Projects (1)
- Institutions (1)
- Investigations (0+2)
- Studies (0+2)
- Assays (1+6)
- Data files (2)
- Publications (1)
- Presentations (0+8)
- Documents (1+8)
PoLiMeR is funded through the EU Marie Skłodowska-Curie Innovative Training Network (ITN), which drives scientific excellence and innovation. ITNs bring together universities, research institutes, industry and clinical partners from across the world to train researchers to doctorate level.
Metabolic diseases are a burden on the European population and health care system. It is increasingly recognised that individual differences with respect to history, lifestyle, and genetic make-up affect disease ...
Programme: This Project is not associated with a Programme
Public web page: http://polimer-itn.eu/
Organisms: Homo sapiens, Mus musculus, Rattus norvegicus
Validation of model's ability to predict oxygen consumption flux as measured usign permeabilised cells in an Oroboros Oxygraph. Generates Fig. 2A in the associated publication.
Download "Model_notebooks.rar", unzip, and run: "2, generate-model-Oroboros-validation-[needs(1)]-20221109.nb" and "4, Fig2A-Oroboros-simulation-data-[needs-(1-2-and-3)]-20221109.nb" after running "1, generate-model-20221109.nb"
Submitter: Christoff Odendaal
Biological problem addressed: Validation
Investigation: Mitochondrial fatty acid oxidation in human liver
Study: Model validation
Organisms: Homo sapiens (batch)
Models: Model notebooks, odendaal2
SOPs: No SOPs
Data files: HepG2 protein concentration for O2 consumption ..., Oxygen concentration and consumption flux in pe...
Snapshots: No snapshots
Protein measurement used to normalised the oxygen consumption flux measured on an Oroboros oxygraph.
Creators: Christoff Odendaal, Barbara Bakker, Ligia Akemi Kiyuna, Albert Gerding; Nicolette Huijkman; Marcel Vieira-Lara; Anne-Claire Martines
Submitter: Christoff Odendaal
Investigations: Mitochondrial fatty acid oxidation in human liver
Studies: Model validation
Assays: HepG2 oxygen consumption
Measured in an Oroboros oxygraph.
Creators: Christoff Odendaal, Barbara Bakker, Ligia Akemi Kiyuna, Albert Gerding; Nicolette Huijkman; Marcel Vieira-Lara; Anne-Claire Martines
Submitter: Christoff Odendaal
Investigations: Mitochondrial fatty acid oxidation in human liver
Studies: Model validation
Assays: HepG2 oxygen consumption
Abstract (Expand)
Authors: Madhulika Singh, Ligia Akemi Kiyuna, Christoff Odendaal, Barbara M. Bakker, Amy C Harms, Thomas Hankemeier
Date Published: 11th Sep 2023
Publication Type: Journal
DOI: 10.26434/chemrxiv-2023-h0w52
Citation: [Preprint]
A short description of the experiments conducted to decide on HepG2 cells as the appropriate line for the generation of an MCAD knockout. IHH, Hep3B, HepG2, and HUH-7 cells were all consdered.
Creators: Christoff Odendaal, Barbara Bakker, Terry G.J. Derks, Ligia Akemi Kiyuna, Emmalie Jager
Submitter: Christoff Odendaal
Investigations: Mitochondrial fatty acid oxidation in human liver
Studies: Model validation
Assays: HepG2 oxygen consumption