SEEK ID: https://fairdomhub.org/people/1496
Location: Germany
ORCID: Not specified
Joined: 11th Feb 2020
Expertise: Not specified
Tools: Not specified
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Investigations (0+17)
- Studies (2+13)
- Assays (1+14)
- Data files (0+1)
- Models (6+2)
- Documents (0+6)
The German Network for Bioinformatics Infrastructure - de.NBI offers first class bioinformatics services including training and education to users in basic and applied life sciences research. In this network 40 projects belonging to eight service centers provide services that cover a wide variety of methods (genomics, proteomics, ...) and applications (from plants to humans). de.NBI-SysBio is the Systems Biology Service Center of de.NBI. In collaboration with FAIRDOM, de.NBI-SysBio serves the ...
Projects: de.NBI-SysBio, ExtremoPharm, ZucAt, Kinetics on the move - Workshop 2016, Example use cases, MIX-UP, Working Group Nicole Radde, MPIEvolBio-SciComp, SABIO-VIS
Web page: http://www.denbi.de
The group around Nicole Radde specializes in the modeling, analysis, and simulation of biochemical systems. This especially includes parameter optimization and identification.
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: https://www.ist.uni-stuttgart.de/research/group-of-nicole-radde/
Start date: 11th Feb 2020
Organisms: Mus musculus
Snapshots: No snapshots
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Submitter: Vincent Wagner
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Organisms: No organisms
Models: SiCaSMA Code
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
We recommend to use a virtual environment with a python 3.11 distribution to reproduce our results. Using anaconda and the environment file eulerpi_env.yml, the working virtual environment is set up through the prompt
conda env create -f eulerpi_env.yml
The environment file eulerpi_env.yml contains a human-readable list of all required dependencies. Consequently, these dependencies can also be installed manually.
In addition to this README and the environment file, the downloaded .zip ...
Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Not specified
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Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Not specified
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Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Not specified
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Investigations: 1 hidden item
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Creator: Vincent Wagner
Submitter: Vincent Wagner
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Studies: SiCaSMA: An alternative stochastic description ...
Assays: Final Report
The Folder contains:
- The MCMC and simulation results, as well as the synthetic data of the Chemical Reaction Network model (DoubleDecayIndep)
- The MCMC and simulation results, as well as the synthetic data of the Lotka-Volterra model (LotkaVolterraJoint)
Together with an executable ipynb script (Exe.ipynb) and the MCMC plotting and execution functions (MCMCFunctions.py).
Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Ordinary differential equations (ODE)
Model format: Not specified
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Investigations: 1 hidden item
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Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Not specified
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Environment: Not specified
Organism: Not specified
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item