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4281 Data files visible to you, out of a total of 6546

Data File_GSM_"Systems-level analysis provides insights on methanol-based production of l-glutamate and its decarboxylation product γ-aminobutyric acid by Bacillus methanolicus"

C1Pro

This archive contains the GSM input, output and model files for the paper "Systems-level analysis provides insights on methanol-based production of l-glutamate and its decarboxylation product γ-aminobutyric acid by Bacillus methanolicus".

Creator: Stéphanie Heux

Submitter: Cláudia Vicente

DOI: 10.15490/fairdomhub.1.datafile.7516.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 7th Oct 2024 at 14:11, Last updated: 12th Jun 2025 at 13:06

TUNEL_quantification.xlsx

Shoulders Lab

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Cell Imaging - Data Linked

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Created: 9th Jun 2025 at 15:58

samples-250609-SC-R719C-A.MSP.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Proteomics Analysis - Data Linked

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Created: 9th Jun 2025 at 15:51

samples-250609-SC-R719C-D.MSP.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: LC - MS/MS (Proteomics) - Data Linked, Proteomics Analysis - Data Linked

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Created: 9th Jun 2025 at 15:46

samples-250609-SC-R719C-A.GEX.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Gene Expression Analysis - Data Linked

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Created: 9th Jun 2025 at 15:35

samples-250609-SC-R719C-DNA.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Library Creation - Metadata, Short Read Sequencing - Data Linked

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Created: 9th Jun 2025 at 15:12

samples-250609-SC-R719C-D.IMG.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Cell Imaging - Data Linked

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Created: 9th Jun 2025 at 15:04

samples-250609-SC-R719C-RNA.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Library Creation - Metadata, RNA Extraction - Metadata

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Created: 9th Jun 2025 at 14:58

samples-250609-SC-R719C-CEL.xlsx

Shoulders Lab

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Shoulders Lab Individual Publications

Studies: Human cartilage model of the precocious osteoar...

Assays: Cell Imaging - Data Linked, LC - MS/MS (Proteomics) - Data Linked, RNA Extraction - Metadata, iPSC Culture and Chondronoid Formation - Metadata

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Created: 9th Jun 2025 at 14:46

Data_Run1

MIX-UP

No description specified

Creator: Karthika Balusamy

Submitter: Karthika Balusamy

DOI: 10.15490/fairdomhub.1.datafile.7873.1

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th May 2025 at 18:56, Last updated: 30th May 2025 at 18:57

Mice CoA biosynthetic intermediates (Fig. 4C)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: Mice (in vivo)

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Created: 9th May 2025 at 15:25, Last updated: 16th May 2025 at 11:45

Mice qPCR (Fig. 4E-F)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

The expression of various genes related to the CoA metabolism as measured by qPCR.

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: Mice (in vivo)

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Created: 16th May 2025 at 08:35, Last updated: 16th May 2025 at 11:45

HepG2 acylcarnitine measurements, palmitate/low-glucose (Fig. S5, Fig. S7)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

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Created: 9th May 2025 at 15:04, Last updated: 16th May 2025 at 11:45

HepG2 acyl-CoA/acylcarnitine measurements statistical significance, palmitate/low-glucose (Fig. S6)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

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Created: 9th May 2025 at 15:06, Last updated: 16th May 2025 at 11:45

HepG2 acyl-CoA/acylcarnitine measurements statistical significance, palmitate/no-glucose (Fig. S4)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

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Created: 9th May 2025 at 15:08, Last updated: 16th May 2025 at 11:45

HepG2 acyl-CoA measurements, palmitate/no-glucose (Fig. 2, Fig. S3, Fig. S7)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

Download

Created: 9th May 2025 at 14:55, Last updated: 16th May 2025 at 11:45

HepG2 CoA labelling data, palmitate/no-glucose (Fig. 3, Fig. S8, Tables S1-S4)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

Incorporation of stable isotope from pantothenate into total and free CoA pools.

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

Download

Created: 9th May 2025 at 15:00, Last updated: 16th May 2025 at 11:45

HepG2 acyl-CoA measurements, palmitate/low-glucose (Fig.S5, Fig. S7)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

Download

Created: 9th May 2025 at 15:02, Last updated: 16th May 2025 at 11:45

HepG2 acylcarnitine measurements, palmitate/no-glucose (Fig. 2, Fig. S2, Fig. S7)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

No description specified

Creator: Christoff Odendaal

Submitter: Christoff Odendaal

Investigations: Mitochondrial fatty acid oxidation in human liver

Studies: Sequestration of CoA and adaptation of CoA meta...

Assays: HepG2 cells (in vitro)

Download

Created: 9th May 2025 at 14:53, Last updated: 16th May 2025 at 11:45

All Metadata PF-IVM_v1.xlsx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Confined cell migration along extracellular mat...

Assays: All Metadata

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Created: 15th May 2025 at 19:03

samples-publish_PF-IVM_A.IMG.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Confined cell migration along extracellular mat...

Assays: Imaging Analysis - Data Linked

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Created: 15th May 2025 at 18:59

samples-publish_PF-IVM_D.IMG.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Confined cell migration along extracellular mat...

Assays: Imaging Analysis - Data Linked, Intravital Microscopy

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Created: 15th May 2025 at 18:53

samples-publish_PF-IVM_MUS.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Confined cell migration along extracellular mat...

Assays: Intravital Microscopy

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Created: 15th May 2025 at 18:49

Poster_Targeting medium chain carboxylates in the cofermentation of cellulose and xylan

Cell4Chem

No description specified

Creator: Juan Iglesias-Riobó

Submitter: Juan Iglesias-Riobó

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: Influence of reactor mode on the cofermentation...

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Created: 12th May 2025 at 15:28, Last updated: 14th May 2025 at 13:52

All Metadata - VB_CC.xlsx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: All Metadata

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Created: 24th Apr 2025 at 18:06

samples-publish_VB-CC_MDL.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Modeling - Data Linked

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Created: 24th Apr 2025 at 18:04

samples-publish_VB-CC_A.CHRM.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Chromatin Sequencing Analysis - Data Linked

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Created: 24th Apr 2025 at 18:01

samples-publish_VB-CC_D.SEQ.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Chromatin Sequencing Analysis - Data Linked, Short Read Sequencing - Data Linked

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Created: 24th Apr 2025 at 17:58

samples-publish_VB-CC_DNA.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Library Creation - Metadata, Short Read Sequencing - Data Linked

Download

Created: 24th Apr 2025 at 17:53

samples-publish_VB-CC_A.IMG.xlsx

MetNet

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Imaging Analysis - Data Linked

Download

Created: 24th Apr 2025 at 17:48