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Satomi Hirose, Tatusya Osaki, Roger D. Kamm
Link to Publication: https://doi.org/10.1101/2024.06.28.601261
Abstract: Metastasis, the leading cause of cancer-related deaths, involves a complex cascade of events, including extravasation. Despite extensive research into metastasis, the mechanisms underlying extravasation remain unclear. Molecular targeted therapies have advanced cancer treatment, yet their efficacy is limited, prompting exploration into novel therapeutic targets. Here, we showed the association of polyploidy in MDA-MB-231 breast cancer cells and their extravasation, using microfluidic systems to reproduce the in vivo microvascular environment. We observed enhanced extravasation in polyploid cells alongside upregulated expression of genes involved in cell-substrate adhesion and cell mechanical dynamics. These findings offer insights into the relationship between polyploidy and extravasation, highlighting potential targets for cancer therapy.
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Created: 3rd Jul 2024 at 20:23
Last updated: 15th Jan 2025 at 19:09
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- Assays (13)
- Data files (14)
- SOPs (8)
- Samples (1854)
Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Institutions: Massachusetts Institute of Technology
Programme: Metastasis Network
Public web page: Not specified
Organisms: Not specified
Submitter: Charles Demurjian
Studies: Impact of fibrinogen, fibrin thrombi and thrombin on cancer cell extrava..., Patient-specific vascularized tumor model: Blocking monocyte recruitment..., Personalized Vascularized Models of Breast Cancer Desmoplasia Reveal Bio..., Polyploidy of MDA-MB-231 cells drives increased extravasation with enhan..., Utilizing convolutional neural networks for discriminating cancer and st...
Assays: All Metadata, All Metadata, Cancer Cell Extravasation Analysis - Data Linked, Cancer Cell Extravasation Analysis - Data Linked, Cell Culture - Metadata, Cell Culture Imaging - Data Linked, Cell Culture Imaging Analysis - Data Linked, Cell Culture and Tumor Spheroid Creation - Metadata, Cell Culture and Tumor Spheroid Creation - Metadata, Clot Modeling Analysis - Data Linked, Convolutional Neural Network - Data Linked, Device Creation - Metadata, Device Creation - Metadata, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Metadata, Flow Cytometry - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Flow Cytometry Analysis - Data Linked, Fluorescence-Activated Cell Sorting - Data Linked, Gene Expression Analysis - Data Linked, Imaging Analysis - Data Attached, Library Prep - Metadata, Microfluidic Device Creation - Metadata, Microfluidic Device Creation - Metadata, Microfluidic Device Imaging - Data Linked, Microvascular Network Formation - Metadata, Migration Assay Analysis - Data Linked, Permeability Analysis - Data Linked, RNA Extraction - Metadata, Real-time RT-PCR - Data Linked, Short Read Sequencing - Data Linked, Tumoroid Formation - Metadata
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240712_V1_GFP_CellCulture.docx
Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_OOC-MVN_Protocol.docx
Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx, samples-publishGFP_OOC.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_Extravasation.docx
Data files: samples-publishGFP_D.IMG.xlsx, samples-publishGFP_OOC.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_Extravasation.docx
Data files: samples-publishGFP_A.CCE.xlsx, samples-publishGFP_D.IMG.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_FACS.docx
Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_D.FLOW.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_Size-and-Proliferation.docx
Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx, samples-publishGFP_D.IMG.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_Size-and-Proliferation.docx
Data files: samples-publishGFP_A.CCI.xlsx, samples-publishGFP_D.IMG.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_RNAseq.docx
Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_RNA.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_RNAseq.docx
Data files: samples-publishGFP_DNA.xlsx, samples-publishGFP_RNA.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_RNAseq.docx
Data files: samples-publishGFP_D.SEQ.xlsx, samples-publishGFP_DNA.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_rtPCR.docx
Data files: samples-publishGFP_D.PCRxlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240712_V1_GFP_RNAseq.docx
Data files: samples-publishGFP_A.GEX.xlsx, samples-publishGFP_D.SEQ.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: All Metadata
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Library Prep - Metadata, Short Read Sequencing - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Gene Expression Analysis - Data Linked, Short Read Sequencing - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Real-time RT-PCR - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Microfluidic Device Imaging - Data Linked, Microvascular Network Formation - Metadata
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cell Culture - Metadata, Cell Culture Imaging - Data Linked, Microvascular Network Formation - Metadata
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cancer Cell Extravasation Analysis - Data Linked, Microfluidic Device Imaging - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cell Culture Imaging - Data Linked, Cell Culture Imaging Analysis - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cell Culture Imaging - Data Linked, Cell Culture Imaging Analysis - Data Linked
Creator: Charles Demurjian
Submitter: Charles Demurjian
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Real-time RT-PCR - Data Linked
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cell Culture - Metadata
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Polyploidy of MDA-MB-231 cells drives increased...
Assays: Cancer Cell Extravasation Analysis - Data Linked, Microfluidic Device Imaging - Data Linked
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Impact of fibrinogen, fibrin thrombi and thromb..., Patient-specific vascularized tumor model: Bloc..., Personalized Vascularized Models of Breast Canc..., Polyploidy of MDA-MB-231 cells drives increased..., Utilizing convolutional neural networks for dis...
Assays: Cell Culture - Metadata, Cell Culture and Tumor Spheroid Creation - Meta..., Cell Culture and Tumor Spheroid Creation - Meta..., Microfluidic Device Creation - Metadata, Tumoroid Formation - Metadata