Programme: IMPAcTB
SEEK ID: https://fairdomhub.org/projects/222
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 13th Jan 2021
Related items
- People (2)
- Programmes (1)
- Institutions (1)
- Investigations (0+1)
- Studies (4)
- Assays (14+2)
- Data files (27)
- SOPs (15)
- Samples (1138)
Projects: IMPAcTB
Institutions: Massachusetts Institute of Technology
Institutions: Massachusetts Institute of Technology
Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology
Projects: IMPAcTB
Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis
Mycobacterium tuberculosis lung infection results in a complex multicellular structure: the granuloma. In some granulomas, immune activity promotes bacterial clearance, but in others, bacteria persist and grow. We identified correlates of bacterial control in cynomolgus macaque lung granulomas by co-registering longitudinal positron emission tomography and computed tomography imaging, single-cell RNA sequencing, and measures of bacterial clearance. Bacterial persistence occurred in granulomas ...
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: DNA Extraction – Metadata, NHP Tissue Collection – Metadata, Single Cell Sequencing – Metadata
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Tissue Extraction – Metadata
Snapshots: Snapshot 1, Snapshot 2
Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.
Abstract Background
The search ...
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Metadata, Patient Visit – Metadata
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Investigation: 1 hidden item
Assays: Anti-Microbial Assay – Metadata, Functional Assay – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Tissue Collection – Metadata
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.BOO-200728-V1_2019_April_Bronchoscopy_Protoco..., P.BOO-200728-V1_BAL-SOP-Ver-3.0-DATED-05-Nov-20...
Data files: PAT-samples-publish2021-10-18_22-26.xlsx, PAV-samples-publish2021-10-18_22-32.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.BOO-210820-V1_Surface-staining-of-BAL-and-PBM..., P.BOO-210910-V1_Broncoscopy-Laboratory-Protoco_..., P.BOO-211014-V1_User-Manual_231944_smxx.pdf
Data files: D.FLOW-samples-publish2021-10-19_02-49.xlsx, TIS-samples-publish2021-10-18_22-37.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: A.FLOW-samples-publish2021-10-22_00-50.xlsx, D.FILE-211016BOO-1_flowcytometry_10.1371.journa..., D.FLOW-samples-publish2021-10-19_02-49.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx
Data files: D.LMX-211203ALT-10_FcR_luminex_FcyR3A_plasma.xlsx, D.LMX-211203ALT-1_isotype_luminex_IgG1_BAL.xlsx, D.LMX-211203ALT-2_isotype_luminex_IgA_BAL.xlsx, D.LMX-211203ALT-3_isotype_luminex_IgM_BAL.xlsx, D.LMX-211203ALT-4_isotype_luminex_IgG1_plasma.xlsx, D.LMX-211203ALT-5_isotype_luminex_IgA_plasma.xlsx, D.LMX-211203ALT-6_isotype_luminex_IgM_plasma.xlsx, D.LMX-211203ALT-7_FcR_luminex_FcyR2A_BAL.xlsx, D.LMX-211203ALT-8_FcR_luminex_FcyR3A_BAL.xlsx, D.LMX-211203ALT-9_FcR_luminex_FcyR2A_plasma.xlsx, D.LMX-samples-publish2022-01-27_23-57.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx
Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Antibody-Fc shifts alveolar macrophage metaboli...
Assays: Tissue Extraction – Metadata
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Antibody-Fc shifts alveolar macrophage metaboli...
Assays: Tissue Extraction – Metadata
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: NHP Tissue Collection – Metadata
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: NHP Tissue Collection – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Functional Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Anti-Microbial Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Robust IgM responses following intravenous vacc...
Assays: Luminex Assay – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Flow Cytometry – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Patient Visit – Metadata
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: 1 hidden item
Studies: Immune cells in bronchoalveolar lavage fluid of...
Assays: Patient Visit – Metadata