Jake Schissel
SEEK ID: https://fairdomhub.org/people/2218
Location:
United States
ORCID: Not specified
Joined: 1st Aug 2022
Expertise: Not specified
Tools: Not specified
Their tagsRelated items
Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab, NExtSEEK Independent Projects
Web page: https://nextseek.mit.edu/
The MIT Superfund Research Program was created in 2017 to be responsive to communities who live near Superfund Sites. In particular, the MIT team leverages scientific research, community engagement, and educational experiences to support people who are concerned about hazardous chemicals in their environment.
Carcinogenic contaminants threaten the health of people living in the Mystic River Watershed (near the Olin, Industriplex, and Wells G&H Superfund sites) and members of Native American ...
Programme: NExtSEEK
Public web page: Not specified
ROR ID: Not specified
Department: Not specified
Country: United States
City: Not specified
Web page: Not specified
Edward B. Irvine, Angel Nikolov, Mehak Z. Khan, Joshua M. Peters, Richard Lu, Jaimie Sixsmith, Aaron Wallace, Esther van Woudenbergh, Sally Shin, Wiktor Karpinski, Jeff C. Hsiao, Arturo Casadevall, Bryan D. Bryson, Lisa Cavacini, Patricia S. Grace, Galit Alter & Sarah M. Fortune
doi: https://doi.org/10.1101/2022.05.01.490220
Mounting evidence indicates that antibodies can contribute towards control of tuberculosis (TB). However, the underlying mechanisms ...
Submitter: Jake Schissel
Investigation: IMPAcTB
Assays: All Metadata, Antibody Challenge - Metadata, Antibody-dependent Cellular Phagocytosis - Data Linked, Antibody-dependent Complement Deposition - Data Linked, Antibody-dependent NK Cell Activation - Data Linked, Antibody-dependent Neutrophil Phagocytosis - Data Linked, Bacterial Challenge - Metadata, Bacterial Survivability Restriction Assay - Data Linked, ELISA - Data Linked, Glycosylation Assay - Data Linked, Library Prep - Metadata, Luminex - Data Linked, Patient Visit - Metadata, Single Cell Clustering Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Tissue Extraction - Metadata
This assay captures administrative and clinical metadata associated with patient study visits, serving as a structured data collection framework rather than a biological measurement assay. It records visit-level contextual information such as visit dates, timepoints, subject identifiers, clinical site details, and protocol-relevant annotations that are essential for linking experimental samples and assay results to their proper clinical context. This metadata layer ensures traceability and data ...
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Creator: Jake Schissel
Submitter: Jake Schissel
DownloadCreator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) *, DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Protocol2 (Text) , Protocol3 (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Real number) , CFUUnits (Text) , CEQ (Real number) , CEQUnits (Text) , CFU/CEQ (Real number) , CFU/CEQUnits (Text) , TimeOfDetection (Text)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (Text) *, Name (Text) *, Protocol (Text) , Protocol2 (Text) , SampleCreationDate (Date) , Scientist (Text) , Parent (Text) , Type (Text) , BarcodeType (Text) , NumPrepCycles (Real number) , Lab (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Real number) , R_bp (Real number) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , LibraryDesign (Text)
Not specified
A single cell clustering analysis file contains processed results grouping cells based on shared expression profiles. It represents the interpreted output used to define cellular subpopulations and visualize transcriptomic structure. Each file summarizes results derived from many single-cell inputs (many→1). Typical file types: .csv, .rds, .h5ad
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Software (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , Parent (Text) , Instrument (Text) , Instrument2 (Text)
Not specified
A CT scan analysis file contains processed imaging data or quantitative measurements derived from computed tomography scans. It represents reconstructed images, segmented structures, or volumetric features used for interpretation. Each file typically summarizes one scan or patient dataset (1→1). Typical file types: .nii, .dcm, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Lab (Text) , Scientist (Text) , Software (Text) , Parent (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Reporter (Text) , RRID (Text)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Protocol (Text) , Scientist (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , Type (Text) , Parent (Text) , VisitFacility (Text) , SampleCreationDate (Date) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Procedure (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Type (Text) , Description (Text) , Parent (Text) , Lab (Text) , Protocol (Text) , ShoreDist (Real number) , ShoreDistUnits (Text) , WaterDepth (Real number) , WaterDepthUnits (Text) , LanderRightLegHeight (Real number) , LanderLeftLegHeight (Real number) , LanderBackLegHeight (Real number) , LanderLegHeightUnits (Text) , FloorDist (Real number) , FloorDistUnits (Text) , SensingVolumeSeparation (Real number) , SensingVolumeSeparationUnits (Text) , ADVVelocityRange (Real number) , ADVVelocityUnits (Text) , ADVPowerLevel (Text) , RunStartTime (Text) , RunDuration (Real number) , RunDurationUnits (Text) , IntegrationTime (Real number) , IntegrationTimeUnits (Text) , Frequency (Real number) , FrequencyUnits (Text) , Wavelength (Real number) , WavelengthUnits (Text) , ModulationFrequency (Real number) , ModulationFrequencyUnits (Text) , DatapointTime (Real number) , DatapointTimeUnits (Text) , ComparatorReference (Real number) , ComparatorReferenceUnits (Text) , LEDCurrentAvgStart (Real number) , LEDCurrentStdevStart (Real number) , LEDCurrentStartTime (Text) , LEDCurrentAvgEnd (Real number) , LEDCurrentStdevEnd (Real number) , LEDCurrentUnits (Text) , LEDCurrentEndTime (Text) , BatteryLevelStart (Real number) , BatteryLevelStartTime (Text) , BatteryLevelEnd (Real number) , BatteryLevelEndTime (Text) , BatteryLevelUnits (Text) , TOCStart (Real number) , TOCStartTime (Text) , TOCEnd (Real number) , TOCEndTime (Text) , TOCUnits (Text) , TemperatureStart (Real number) , TemperatureStartTime (Text) , ThermometerStart (Text) , TemperatureEnd (Real number) , TemperatureEndTime (Text) , ThermometerEnd (Text) , TemperatureUnits (Text) , UncompensatedConductivityStart (Real number) , TemperatureCompensationCoefficientConductivity (Text) , ConductivityStartTime (Text) , UncompensatedConductivityEnd (Real number) , ConductivityEndTime (Text) , UncompensatedConductivityUnits (Text) , FluorescenceLinearCalibrationSlope (Real number) , FluorescenceLinearCalibrationIntercept (Real number) , FluorescenceLinearCalibrationDate (Date) , FluorescenceLinearCalibrationUnits (Text) , TemperatureLinearCalibrationSlope (Real number) , TemperatureLinearCalibrationIntercept (Real number) , TemperatureCalibrationDate (Date) , TemperatureCalibrationUnits (Text) , ConductivityLinearCalibrationSlope (Real number) , ConductivityLinearCalibrationIntercept (Real number) , ConductivityCalibrationDate (Date) , ConductivityCalibrationUnits (Text) , LEDCurrentLinearCalibrationSlope (Real number) , LEDCurrentLinearCalibrationIntercept (Real number) , LEDCurrentCalibrationDate (Date) , LEDCurrentCalibrationUnits (Text)
Not specified
UID (Text) *, Name (Text) *, LocationType (Text) , Description (Text) , GPS (Text) , GPSUnits (Text)
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