SEEK ID: https://fairdomhub.org/people/2218
Location: United States
ORCID: Not specified
Joined: 1st Aug 2022
Expertise: Not specified
Tools: Not specified
Related items
- Programmes (2)
- Projects (2)
- Institutions (1)
- Studies (1)
- Assays (10)
- Data files (17)
- SOPs (14)
- Sample types (12)
- Samples (197)
Projects: Hi-IMPAcTB
Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis
Programme: MIT Superfund Research
Public web page: Not specified
Organisms: Not specified
About
This project houses all the publicly available datasets generated by the Hi-IMPAcTB consortium over the course of its 7+ years.
What is Hi-IMPAcTB?
Hi-IMPAcTB is an ambitious endeavor bringing together a team of international, interdisciplinary researchers to improve our understanding of host-pathogen interactions in the context of tuberculosis (TB). Funded by a multi-center contract from the NIH, the long-term goal of the consortium is to enable principled vaccine design by improving ...
Programme: IMPAcTB
Public web page: https://grantome.com/grant/NIH/75N93019C00071-0-9999-1
Organisms: Mus musculus, Homo sapiens, Macaca fascicularis, Macaca mulatta
Edward B. Irvine, Joshua M. Peters, Richard Lu, Patricia S. Grace, Jaimie Sixsmith, Aaron Wallace, Matthew Schneider, Sally Shin, Wiktor Karpinski, Jeff C. Hsiao, Esther van Woudenbergh, Arturo Casadevall, Bryan D. Bryson, Lisa Cavacini, Galit Alter, Sarah M. Fortune doi: https://doi.org/10.1101/2022.05.01.490220
Novel vaccination and therapeutic strategies are urgently needed to mitigate the tuberculosis (TB) epidemic. While extensive efforts have focused ...
Submitter: Jake Schissel
Investigation: IMPAcTB
Assays: All Metadata, Antibody Challenge - Metadata, Antibody-dependent Cellular Phagocytosis - Data Linked, Antibody-dependent Complement Deposition - Data Linked, Antibody-dependent NK Cell Activation - Data Linked, Antibody-dependent Neutrophil Phagocytosis - Data Linked, Bacterial Challenge - Metadata, Bacterial Survivability Restriction Assay - Data Linked, ELISA - Data Linked, Glycosylation Assay - Data Linked, Library Prep - Metadata, Luminex - Data Linked, Patient Visit - Metadata, Single Cell Clustering Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Tissue Extraction - Metadata
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-220823-V1_P---Mtb-Infection.rtf, P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-220823-V1_P---Necropsy.docx, P.FLY-220823-V1_P---PET_CT_Imaging.docx
Data files: NHP-samples-publish2022-09-28_17-30.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-220823-V1_P---Bacteria-Burden.docx, P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf, P.FLY-220823-V1_P---Necropsy.docx
Data files: PAV-samples-publish2022-11-3_15-09.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...
Data files: DNA-samples-publish2022-10-18_00-56.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...
Data files: D.SEQ-samples-publish2022-10-25_19-32.xlsx, DNA-samples-publish2022-10-18_00-56.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf
Data files: A.SCXP-samples-publish2022-10-25_21-23.xlsx, D.SEQ-samples-publish2022-10-25_19-32.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.SHA-220824-V1_P---Clustering.docx
Data files: A.SCCL-samples-publish2022-10-28_13-03.xlsx, A.SCXP-samples-publish2022-10-25_21-23.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-220824-V1_P---Immunohistochemistry-Analys...
Data files: AB-samples-publish2022-10-28_14-18.xlsx, ABP-samples-publish2022-10-28_14-25.xlsx, D.IMG-samples-publish2022-10-28_14-40.xlsx, samples-publish2023-03-21_22-232.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx
Data files: D.IMG-samples-publish2022-10-28_13-10.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx
Data files: A.CTSC-samples-publish2022-10-28_13-14.xlsx, D.IMG-samples-publish2022-10-28_13-10.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.HEM-220913-V2_20210513_fieldworkOperatingProc..., P.HEM-220913-V2_20210520_fieldworkOperatingProc..., P.HEM-220913-V2_20210610_fieldworkOperatingProc...
Data files: D.SNSR-samples-publish2022-10-11_18-50.xlsx, LOC-samples-publish2022-10-11_18-37.xlsx, bedford2_v2.zip, mystic9_v2.zip, sunder1_v2.zip
Snapshots: No snapshots
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: NHP Necropsy – Metadata, PET-CT Scan – Data Linked, Patient Visit – Metadata
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Single Cell Expression Matrix Analysis – Data L..., Single Cell Sequencing – Data Linked
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Library Creation – Metadata, Single Cell Sequencing – Data Linked
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Library Creation – Metadata, NHP Necropsy – Metadata
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Batch sample publishing
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Patient Visit – Metadata
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca..., Protective intravenous BCG vaccination induces ...
Assays: Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data L...
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca..., Protective intravenous BCG vaccination induces ...
Assays: DNA Extraction - Metadata, Library Creation - Metadata, Library Creation – Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked, Single Cell Sequencing – Data Linked
Creator: Jake Schissel
Submitter: Jake Schissel
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: NHP Necropsy – Metadata
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: NHP Necropsy – Metadata
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Patient Visit – Metadata
Creator: Jake Schissel
Submitter: Jake Schissel
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , Type (Text) , Parent (Text) , VisitFacility (Text) , SampleCreationDate (Date) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Procedure (Text)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Software (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Real number) , R_bp (Real number) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , LibraryDesign (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Protocol2 (Text) , Protocol3 (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Real number) , CFUUnits (Text) , CEQ (Real number) , CEQUnits (Text) , CFU/CEQ (Real number) , CFU/CEQUnits (Text) , TimeOfDetection (Text)
Not specified
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Not specified