Sample types
What is a Sample type?Filters
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) *, DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (Text)
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A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Protocol2 (Text) , Protocol3 (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Real number) , CFUUnits (Text) , CEQ (Real number) , CEQUnits (Text) , CFU/CEQ (Real number) , CFU/CEQUnits (Text) , TimeOfDetection (Text)
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A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (Text) *, Name (Text) *, Protocol (Text) , Protocol2 (Text) , SampleCreationDate (Date) , Scientist (Text) , Parent (Text) , Type (Text) , BarcodeType (Text) , NumPrepCycles (Real number) , Lab (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Real number) , R_bp (Real number) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , LibraryDesign (Text)
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A single cell clustering analysis file contains processed results grouping cells based on shared expression profiles. It represents the interpreted output used to define cellular subpopulations and visualize transcriptomic structure. Each file summarizes results derived from many single-cell inputs (many→1). Typical file types: .csv, .rds, .h5ad
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Software (Text)
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An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , Parent (Text) , Instrument (Text) , Instrument2 (Text)
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A CT scan analysis file contains processed imaging data or quantitative measurements derived from computed tomography scans. It represents reconstructed images, segmented structures, or volumetric features used for interpretation. Each file typically summarizes one scan or patient dataset (1→1). Typical file types: .nii, .dcm, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Lab (Text) , Scientist (Text) , Software (Text) , Parent (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Reporter (Text) , RRID (Text)
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An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Protocol (Text) , Scientist (Text)
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A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , Type (Text) , Parent (Text) , VisitFacility (Text) , SampleCreationDate (Date) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Procedure (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Type (Text) , Description (Text) , Parent (Text) , Lab (Text) , Protocol (Text) , ShoreDist (Real number) , ShoreDistUnits (Text) , WaterDepth (Real number) , WaterDepthUnits (Text) , LanderRightLegHeight (Real number) , LanderLeftLegHeight (Real number) , LanderBackLegHeight (Real number) , LanderLegHeightUnits (Text) , FloorDist (Real number) , FloorDistUnits (Text) , SensingVolumeSeparation (Real number) , SensingVolumeSeparationUnits (Text) , ADVVelocityRange (Real number) , ADVVelocityUnits (Text) , ADVPowerLevel (Text) , RunStartTime (Text) , RunDuration (Real number) , RunDurationUnits (Text) , IntegrationTime (Real number) , IntegrationTimeUnits (Text) , Frequency (Real number) , FrequencyUnits (Text) , Wavelength (Real number) , WavelengthUnits (Text) , ModulationFrequency (Real number) , ModulationFrequencyUnits (Text) , DatapointTime (Real number) , DatapointTimeUnits (Text) , ComparatorReference (Real number) , ComparatorReferenceUnits (Text) , LEDCurrentAvgStart (Real number) , LEDCurrentStdevStart (Real number) , LEDCurrentStartTime (Text) , LEDCurrentAvgEnd (Real number) , LEDCurrentStdevEnd (Real number) , LEDCurrentUnits (Text) , LEDCurrentEndTime (Text) , BatteryLevelStart (Real number) , BatteryLevelStartTime (Text) , BatteryLevelEnd (Real number) , BatteryLevelEndTime (Text) , BatteryLevelUnits (Text) , TOCStart (Real number) , TOCStartTime (Text) , TOCEnd (Real number) , TOCEndTime (Text) , TOCUnits (Text) , TemperatureStart (Real number) , TemperatureStartTime (Text) , ThermometerStart (Text) , TemperatureEnd (Real number) , TemperatureEndTime (Text) , ThermometerEnd (Text) , TemperatureUnits (Text) , UncompensatedConductivityStart (Real number) , TemperatureCompensationCoefficientConductivity (Text) , ConductivityStartTime (Text) , UncompensatedConductivityEnd (Real number) , ConductivityEndTime (Text) , UncompensatedConductivityUnits (Text) , FluorescenceLinearCalibrationSlope (Real number) , FluorescenceLinearCalibrationIntercept (Real number) , FluorescenceLinearCalibrationDate (Date) , FluorescenceLinearCalibrationUnits (Text) , TemperatureLinearCalibrationSlope (Real number) , TemperatureLinearCalibrationIntercept (Real number) , TemperatureCalibrationDate (Date) , TemperatureCalibrationUnits (Text) , ConductivityLinearCalibrationSlope (Real number) , ConductivityLinearCalibrationIntercept (Real number) , ConductivityCalibrationDate (Date) , ConductivityCalibrationUnits (Text) , LEDCurrentLinearCalibrationSlope (Real number) , LEDCurrentLinearCalibrationIntercept (Real number) , LEDCurrentCalibrationDate (Date) , LEDCurrentCalibrationUnits (Text)
Not specified
UID (Text) *, Name (Text) *, LocationType (Text) , Description (Text) , GPS (Text) , GPSUnits (Text)
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